CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PNPT1
(
Takifugu rubripes
)
KH,S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00575 (S1)
IPR018111
IPR003029
ENSTRUG00000005495
T22384_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000013202
KH
609
666
IENVRVPISKRALFVGPGGYNLRRLQAQTGVTINQVDEETFSVFAPTPGAMNEVLASI
ENSTRUP00000013202
S1
678
752
LDFGAIYTATIIEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSALGFEVGQQIQVKYFGRDPTDGRMRLSRK
Links
Other
KH,S1
family RBPs
Other
Takifugu rubripes
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PNPT1
Tetraodon nigroviridis
ENSTNIG00000007460
N
0.896
PNPT1
Gasterosteus aculeatus
ENSGACG00000010840
N
0.873
PNPT1
Oryzias latipes
ENSORLG00000004335
N
0.851
PNPT1
Monodelphis domestica
ENSMODG00000001984
N
0.791
PNPT1
Cavia porcellus
ENSCPOG00000011008
N
0.791
PNPT1
Procavia capensis
ENSPCAG00000010806
N
0.784
PNPT1
Anolis carolinensis
ENSACAG00000003692
N
0.784
PNPT1
Pan troglodytes
ENSPTRG00000011934
N
0.776
PNPT1
Ochotona princeps
ENSOPRG00000010232
N
0.776
PNPT1
Homo sapiens
ENSG00000138035
N
0.776
pnpt1
Xenopus tropicalis
ENSXETG00000006075
N
0.769
PNPT1
Callithrix jacchus
ENSCJAG00000009740
N
0.769
PNPT1
Myotis lucifugus
ENSMLUG00000003886
N
0.769
Pnpt1
Mus musculus
ENSMUSG00000020464
N
0.769
Ame_R001792
Ailuropoda melanoleuca
Ame_R001792
N
0.769
PNPT1
Spermophilus tridecemlineatus
ENSSTOG00000006304
N
0.769
PNPT1
Bos taurus
ENSBTAG00000008909
N
0.769
PNPT1
Oryctolagus cuniculus
ENSOCUG00000006889
N
0.761
Pnpt1
Rattus norvegicus
ENSRNOG00000003600
N
0.761
PNPT1
Canis familiaris
ENSCAFG00000002891
N
0.761
ENSPPYG00000012399
Pongo pygmaeus
ENSPPYG00000012399
N
0.761
LOC100052355
Equus caballus
ENSECAG00000020058
N
0.761
PNPT1
Sus scrofa
ENSSSCG00000008399
N
0.761
PNPT1
Vicugna pacos
ENSVPAG00000007097
N
0.761
PNPT1
Felis catus
ENSFCAG00000013236
N
0.754
PNPT1
Taeniopygia guttata
ENSTGUG00000006908
N
0.754
PNPT1
Tursiops truncatus
ENSTTRG00000000029
N
0.754
PNPT1
Gallus gallus
ENSGALG00000007935
N
0.739
PNPT1
Meleagris gallopavo
ENSMGAG00000001952
N
0.739
PNPT1
Choloepus hoffmanni
ENSCHOG00000007360
N
0.739
ENSOANG00000011178
Ornithorhynchus anatinus
ENSOANG00000011178
N
0.737
e_gw.10.151.1
Branchiostoma floridae
e_gw.10.151.1
N
0.701
gw.63.132.1
Branchiostoma floridae
gw.63.132.1
N
0.701