CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pnpt1
(
Rattus norvegicus
)
KH,S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00575 (S1)
IPR018111
IPR003029
ENSRNOG00000003600
T22379_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000004919
KH
607
664
VETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQVDEETFSIFAPTPTAMHEARDFI
ENSRNOP00000004919
S1
675
750
QLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRK
ENSRNOP00000053634
KH
318
375
VETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQVDEETFSIFAPTPTAMHEARDFI
ENSRNOP00000053634
S1
386
461
QLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRK
Links
Other
KH,S1
family RBPs
Other
Rattus norvegicus
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava25492.m1
Manihot esculenta
cassava25492.m1
N
0.000
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.000
GRMZM2G475017
Zea mays
GRMZM2G475017
N
0.000
LjSGA_017774.1
Lotus japonicus
LjSGA_017774.1
N
0.000
LjSGA_036568.1
Lotus japonicus
LjSGA_036568.1
N
0.000
PDK_20s1508231g002
Phoenix dactylifera
PDK_20s1508231g002
N
0.000