ENSCPOG00000010263 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000010263 T35823_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		1.000
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		1.000
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.759
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000009216 RRM 60 124
ENSCPOP00000009216 RRM 134 200

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB02178.1 Alternaria brassicicola AB02178.1 N 0.000
ARB_01198 Arthroderma benhamiae ARB_01198 N 0.000
BC1G_15263 Botrytis cinerea BC1G_15263 N 0.000
ACLA_037570 Aspergillus clavatus CADACLAG00003297 N 0.000
AFUA_3G09770 Aspergillus fumigatus CADAFUAG00005073 N 0.000
An16g03400 Aspergillus niger CADANGAG00012812 N 0.000
ANIA_05009 Aspergillus nidulans CADANIAG00005383 N 0.000
AO090005001273 Aspergillus oryzae CADAORAG00003159 N 0.000
ATEG_04498 Aspergillus terreus CADATEAG00009601 N 0.000
NFIA_067530 Neosartorya fischeri CADNFIAG00005936 N 0.000
fgenesh1_pm.00168_#_218 Aspergillus carbonarius fgenesh1_pm.00168_#_218 N 0.000
GSTUMT00007469001 Tuber melanosporum GSTUMT00007469001 N 0.000
MCYG_03431 Microsporum canis MCYG_03431 N 0.000
MGYG_00597 Microsporum gypseum MGYG_00597 N 0.000
Pc12g15760 Penicillium chrysogenum Pc12g15760 N 0.000
Pc22g26960 Penicillium chrysogenum Pc22g26960 N 0.000
PMAA_025600 Penicillium marneffei PMAA_025600 N 0.000
PTRG_03270 Pyrenophora tritici repentis PTRG_03270 N 0.000
SNOG_14491 Stagonospora nodorum SNOG_14491 N 0.000
SS1G_11879 Sclerotinia sclerotiorum SS1G_11879 N 0.000
TEQG_00939 Trichophyton equinum TEQG_00939 N 0.000
TERG_00938 Trichophyton rubrum TERG_00938 N 0.000
TESG_04474 Trichophyton tonsurans TESG_04474 N 0.000
TRV_03302 Trichophyton verrucosum TRV_03302 N 0.000