CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ATEG_04498
(
Aspergillus terreus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADATEAG00009601
T33779_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADATEAP00009601
RRM
405
468
LFVGNLPTERVTKRDLFHIFHKYGKLAQISIKQAYGFIQFLESSACKQALDVEQGAVVRGRKTW
Links
Other
RRM
family RBPs
Other
Aspergillus terreus
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AFLA_085050
Aspergillus flavus
CADAFLAG00001284
N
0.938
An16g03400
Aspergillus niger
CADANGAG00012812
N
0.938
AO090005001273
Aspergillus oryzae
CADAORAG00003159
N
0.938
fgenesh1_pm.00168_#_218
Aspergillus carbonarius
fgenesh1_pm.00168_#_218
N
0.922
AFUA_3G09770
Aspergillus fumigatus
CADAFUAG00005073
N
0.875
Pc12g15760
Penicillium chrysogenum
Pc12g15760
N
0.875
NFIA_067530
Neosartorya fischeri
CADNFIAG00005936
N
0.859
ACLA_037570
Aspergillus clavatus
CADACLAG00003297
N
0.859
ANIA_05009
Aspergillus nidulans
CADANIAG00005383
N
0.859
Pc22g26960
Penicillium chrysogenum
Pc22g26960
N
0.797
PMAA_025600
Penicillium marneffei
PMAA_025600
N
0.781
MCYG_03431
Microsporum canis
MCYG_03431
N
0.766
TESG_04474
Trichophyton tonsurans
TESG_04474
N
0.750
TERG_00938
Trichophyton rubrum
TERG_00938
N
0.750
TRV_03302
Trichophyton verrucosum
TRV_03302
N
0.750
ARB_01198
Arthroderma benhamiae
ARB_01198
N
0.750
MGYG_00597
Microsporum gypseum
MGYG_00597
N
0.750
TEQG_00939
Trichophyton equinum
TEQG_00939
N
0.750
PTRG_03270
Pyrenophora tritici repentis
PTRG_03270
N
0.703
EAT78031.2
Phaeosphaeria nodorum
EAT78031.2
N
0.703
AB02178.1
Alternaria brassicicola
AB02178.1
N
0.703
GSTUMT00007469001
Tuber melanosporum
GSTUMT00007469001
N
0.703
SNOG_14491
Stagonospora nodorum
SNOG_14491
N
0.703
SS1G_11879
Sclerotinia sclerotiorum
SS1G_11879
N
0.703