ENSCSAVG00000007809 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000007809 T35999_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000013305 RRM 27 98
ENSCSAVP00000013306 RRM 1 39
ENSCSAVP00000013306 RRM 56 127

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.706
BGIBMGA005282 Bombyx mori BGIBMGA005282 N 0.739
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.706
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.706
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.706
ENSCING00000002337 Ciona intestinalis ENSCING00000002337 N 0.974
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.706
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.706
sf3b4 Danio rerio ENSDARG00000018574 D 0.706
ENSDORG00000016366 Dipodomys ordii ENSDORG00000016366 I 0.856
LOC100054350 Equus caballus ENSECAG00000024737 I 0.706
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.706
SF3B4 Homo sapiens ENSG00000143368 I 0.886
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.706
SF3B4 Gallus gallus ENSGALG00000013352 I 0.706
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.706
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.706
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.706
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.706
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.706
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.706
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.706
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.706
ENSOANG00000004768 Ornithorhynchus anatinus ENSOANG00000004768 I 0.858
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.706
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.706
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.706
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.706
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.706
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.706
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.706
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.706
ENSSTOG00000000684 Spermophilus tridecemlineatus ENSSTOG00000000684 I 0.865
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.706
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.706
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.706
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.706
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.706
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.706
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.706
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.750