ENSDORG00000016366 (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000016366 T36548_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.713
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000015400 RRM 1 30
ENSDORP00000015400 RRM 47 118

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSSTOG00000000684 Spermophilus tridecemlineatus ENSSTOG00000000684 I 0.990
ENSOANG00000004768 Ornithorhynchus anatinus ENSOANG00000004768 I 0.903
SF3B4 Homo sapiens ENSG00000143368 I 0.895
ENSCSAVG00000007809 Ciona savignyi ENSCSAVG00000007809 I 0.856
ENSCING00000002337 Ciona intestinalis ENSCING00000002337 N 0.833
BGIBMGA005282 Bombyx mori BGIBMGA005282 N 0.814
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.713
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.713
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.713
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.713
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.713
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.713
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.713
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.713
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.713
sf3b4 Danio rerio ENSDARG00000018574 D 0.713
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.713
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.713
LOC100054350 Equus caballus ENSECAG00000024737 I 0.713
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.713
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.713
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.713
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.713
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.713
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.713
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.713
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.713
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.713
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.713
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.713
SF3B4 Gallus gallus ENSGALG00000013352 I 0.713
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.713
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.713
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.713
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.713
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.713
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.713
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.713
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.713
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.713
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.706
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.706
AAH77458 Xenopus laevis AAH77458 I 0.706
AAH45264 Xenopus laevis AAH45264 I 0.706
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.703