GRMZM2G102639 (Zea mays)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GRMZM2G102639 T54108_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.895
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.757
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.741
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G102639_P01 RRM 27 97
GRMZM2G102639_P01 RRM 114 185
GRMZM2G102639_P02 RRM 27 98

Links

Other RRM family RBPs
Other Zea mays RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.993
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.986
SB01G020190 Sorghum bicolor Sb01g020190 I 0.986
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.986
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.972
PK08238.1 Cannabis sativa PK08238.1 I 0.930
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.930
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.923
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.923
MDP0000320945 Malus x domestica MDP0000320945 I 0.923
ppa007508m Prunus persica ppa007508m I 0.923
MDP0000131129 Malus x domestica MDP0000131129 I 0.923
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.916
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.916
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.916
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.916
30183.m001303 Ricinus communis 30183.m001303 I 0.909
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.895
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.853
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.846
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.832
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.825
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.825
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.790
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.790
AAH77458 Xenopus laevis AAH77458 I 0.776
AAH45264 Xenopus laevis AAH45264 I 0.776
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.776
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.776
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.776
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.776
AAEL013795 Aedes aegypti AAEL013795 I 0.776
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.776
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.776
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.769
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.769
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.769
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.769
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.769
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.769
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.769
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.769
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.769
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.769
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.769
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.769
GI16317 Drosophila mojavensis FBgn0139065 I 0.769
GJ15655 Drosophila virilis FBgn0202845 I 0.769
ISCW010601 Ixodes scapularis ISCW010601 I 0.769
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.769
GH17589 Drosophila grimshawi FBgn0125059 I 0.769
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.769
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.769
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.769
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.769
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.769
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.769
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.769
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.769
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.769
sf3b4 Danio rerio ENSDARG00000018574 D 0.769
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.769
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.769
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.769
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.769
LOC100054350 Equus caballus ENSECAG00000024737 I 0.769
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.769
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.769
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.769
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.769
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.769
SF3B4 Gallus gallus ENSGALG00000013352 I 0.769
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.769
SF3B4 Homo sapiens ENSG00000143368 I 0.769
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.769
AGAP001538 Anopheles gambiae AGAP001538 I 0.762
GK19717 Drosophila willistoni FBgn0221715 I 0.762
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.762
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.762
GL21313 Drosophila persimilis FBgn0158906 I 0.762
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.762
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.762
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.762
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.762
GE16738 Drosophila yakuba FBgn0234234 I 0.762
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.762
GF20385 Drosophila ananassae FBgn0097392 I 0.762
GG19577 Drosophila erecta FBgn0111779 I 0.762
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.762
Spx Drosophila melanogaster FBgn0015818 I 0.755
GM12470 Drosophila sechellia FBgn0167407 I 0.755
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.755
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.755
XM_002883791.1 Arabidopsis lyrata Al_scaffold_0003_3307 I 0.755
ENSCSAVG00000007809 Ciona savignyi ENSCSAVG00000007809 I 0.750
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.748
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.748
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.745
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.741
PHUM263440 Pediculus humanus PHUM263440 I 0.741
Smp_067420 Schistosoma mansoni Smp_067420 D 0.741
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.741
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.741
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.741
LOAG_01189 Loa loa LOAG_01189 I 0.734
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.734
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.727
sap-49 Caenorhabditis elegans C08B11.5 D 0.727
Bm1_43460 Brugia malayi Bm1_43460 I 0.727
CRE01639 Caenorhabditis remanei CRE01639 I 0.727
CBN06124 Caenorhabditis brenneri CBN06124 I 0.727
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.720
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.720
59062 Aureococcus anophagefferens 59062 I 0.720
99199 Helobdella robusta 99199 I 0.720
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.713
CJA19238 Caenorhabditis japonica CJA19238 I 0.713
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.713
CBG13349 Caenorhabditis briggsae CBG13349 I 0.713