ENSSTOG00000000684 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000000684 T41549_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000000612 RRM 1 31
ENSSTOP00000000612 RRM 48 119

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSDORG00000016366 Dipodomys ordii ENSDORG00000016366 I 0.990
ENSOANG00000004768 Ornithorhynchus anatinus ENSOANG00000004768 I 0.912
SF3B4 Homo sapiens ENSG00000143368 I 0.904
ENSCSAVG00000007809 Ciona savignyi ENSCSAVG00000007809 I 0.865
ENSCING00000002337 Ciona intestinalis ENSCING00000002337 N 0.842
BGIBMGA005282 Bombyx mori BGIBMGA005282 N 0.806
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.720
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.720
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.720
SF3B4 Gallus gallus ENSGALG00000013352 I 0.720
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.720
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.720
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.720
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.720
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.720
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.720
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.720
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.720
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.720
LOC100054350 Equus caballus ENSECAG00000024737 I 0.720
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.720
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.720
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.720
sf3b4 Danio rerio ENSDARG00000018574 D 0.720
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.720
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.720
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.720
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.720
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.720
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.720
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.720
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.720
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.720
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.720
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.720
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.720
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.720
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.720
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.720
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.720
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.713
AAH45264 Xenopus laevis AAH45264 I 0.713
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.713
AAH77458 Xenopus laevis AAH77458 I 0.713
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.710
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.706
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.706