ENSDARG00000074310 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000074310 T36223_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.957
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.957
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.957
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.870
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000099660 RRM 111 179

Links

Other RRM family RBPs
Other Danio rerio RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
21605_YPL178W Saccharomyces mikatae 21605_YPL178W N 0.000
24632_YPL178W Saccharomyces bayanus 24632_YPL178W N 0.000
A7TEB0_VANPO Vanderwaltozyma polyspora A7TEB0_VANPO N 0.000
CAGL0C01529g Candida glabrata CAGL0C01529g N 0.000
CBC2 Ashbya gossypii CBC2 N 0.000
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.000
KLLA0B10472g Kluyveromyces lactis KLLA0B10472g N 0.000
KLTH0H05214g Kluyveromyces thermotolerans KLTH0H05214g N 0.000
Kwal_11096 Kluyveromyces waltii Kwal_11096 N 0.000
SAKL0A05588g Lachancea kluyveri SAKL0A05588g N 0.000
Scas_Contig720.2 Saccharomyces castellii Scas_Contig720.2 N 0.000
Skud_Contig1957.10 Saccharomyces kudriavzevii Skud_Contig1957.10 N 0.000
CBC2 Saccharomyces cerevisiae YPL178W N 0.000