CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBC2
(
Ashbya gossypii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CBC2
T55721_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Q754W7
RRM
48
118
IYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTPQEALAALKYLSKTKLDDREIT
Links
Other
RRM
family RBPs
Other
Ashbya gossypii
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A7TEB0_VANPO
Vanderwaltozyma polyspora
A7TEB0_VANPO
N
0.859
CAGL0C01529g
Candida glabrata
CAGL0C01529g
N
0.845
Scas_Contig720.2
Saccharomyces castellii
Scas_Contig720.2
N
0.831
CBC2
Saccharomyces cerevisiae
YPL178W
N
0.831
SAKL0A05588g
Lachancea kluyveri
SAKL0A05588g
N
0.831
Kwal_11096
Kluyveromyces waltii
Kwal_11096
N
0.817
KLTH0H05214g
Kluyveromyces thermotolerans
KLTH0H05214g
N
0.817
21605_YPL178W
Saccharomyces mikatae
21605_YPL178W
N
0.817
Skud_Contig1957.10
Saccharomyces kudriavzevii
Skud_Contig1957.10
N
0.817
24632_YPL178W
Saccharomyces bayanus
24632_YPL178W
N
0.803
KLLA0B10472g
Kluyveromyces lactis
KLLA0B10472g
N
0.775
ZYRO0G19844g
Zygosaccharomyces rouxii
ZYRO0G19844g
N
0.775