RBFOX3 (Equus caballus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSECAG00000023811 T36714_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.942
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.942
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.942
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.870
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000021479 RRM 111 179

Links

Other RRM family RBPs
Other Equus caballus RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
12521_YJR091C Saccharomyces mikatae 12521_YJR091C N 0.000
12627_YJR091C Saccharomyces paradoxus 12627_YJR091C N 0.000
12964_YJR091C Saccharomyces bayanus 12964_YJR091C N 0.000
A7TIG6_VANPO Vanderwaltozyma polyspora A7TIG6_VANPO N 0.000
A7TM89_VANPO Vanderwaltozyma polyspora A7TM89_VANPO N 0.000
CAGL0M09108g Candida glabrata CAGL0M09108g N 0.000
KLLA0E06029g Kluyveromyces lactis KLLA0E06029g N 0.000
KLTH0F07524g Kluyveromyces thermotolerans KLTH0F07524g N 0.000
SAKL0F14102g Lachancea kluyveri SAKL0F14102g N 0.000
Scas_Contig674.27 Saccharomyces castellii Scas_Contig674.27 N 0.000
JSN1 Saccharomyces cerevisiae YJR091C N 0.000
ZYRO0G17446g Zygosaccharomyces rouxii ZYRO0G17446g N 0.000