CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PSPC1
(
Felis catus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSFCAG00000013701
T37136_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SFPQ
M308_0.6
Homo sapiens
Sequence logo not available
UGGAGAGGAAC
SELEX
Cook et al.(2011)
489_12403470
0.714
SFPQ
M168_0.6
Homo sapiens
KURRUKK
RNAcompete
Ray et al.(2013)
RNCMPT00177
0.714
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSFCAP00000012708
RRM
78
142
LFVRNLPTDITEEDFKRLFERYGEPSEVIINRDRGFGFIHLESRTLAEIAKAELDGTILKSRPLR
ENSFCAP00000012708
RRM
152
215
LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF
Links
Other
RRM
family RBPs
Other
Felis catus
RBPs
64 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G426591
Zea mays
GRMZM2G426591
N
0.000
Sb07g005360
Sorghum bicolor
Sb07g005360
N
0.000