CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Sb07g005360
(
Sorghum bicolor
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Sb07g005360
T46041_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb07g005360.1
RRM
123
193
LWIGDLQYWMDENYVYGCFASTGEVQNVKLIRDKHTGQLQGYGFIEFISRAAAERVLQTYNGTMMPNVELP
Sb07g005360.1
RRM
213
284
IFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRSKGYGFVKFGDPNEQARAMTEMNGMLCSSRPMR
Sb07g005360.2
RRM
123
193
LWIGDLQYWMDENYVYGCFASTGEVQNVKLIRDKHTGQLQGYGFIEFISRAAAERVLQTYNGTMMPNVELP
Sb07g005360.2
RRM
213
284
IFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRSKGYGFVKFGDPNEQARAMTEMNGMLCSSRPMR
Links
Other
RRM
family RBPs
Other
Sorghum bicolor
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G426591
Zea mays
GRMZM2G426591
N
0.979
GRMZM2G058098
Zea mays
GRMZM2G058098
N
0.888
PK15181.1
Cannabis sativa
PK15181.1
N
0.720
POPTR_0011s14150
Populus trichocarpa
POPTR_0011s14150
N
0.720
Cucsa.085240
Cucumis sativus
Cucsa.085240
N
0.720
GSVIVG00037634001
Vitis vinifera
GSVIVG00037634001
N
0.713
Medtr8g146650
Medicago truncatula
Medtr8g146650
N
0.713
MDP0000224315
Malus x domestica
MDP0000224315
N
0.713
BGIOSIBCE011803
Oryza indica
BGIOSIBCE011803
N
0.713