CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RDM1
(
Loxodonta africana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSLAFG00000029300
T38133_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000021515
RRM
29
90
EDLHRSLFTVFSKFGLLYSVRVFPNAAVARPGFYAIIKFYSARDAHRAQKACNRKQLFQKSP
Links
Other
RRM
family RBPs
Other
Loxodonta africana
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL011251
Aedes aegypti
AAEL011251
N
0.000
AGAP004509
Anopheles gambiae
AGAP004509
N
0.000
amel4_ncbi_hmm34588
Apis mellifera
amel4_ncbi_hmm34588
N
0.000
CPIJ014747
Culex quinquefasciatus
CPIJ014747
N
0.000
CpipJ_CPIJ014747
Culex pipiens
CpipJ_CPIJ014747
N
0.000
estExt_fgenesh2_pm.C_1790010
Branchiostoma floridae
estExt_fgenesh2_pm.C_1790010
N
0.000
estExt_Genewise1Plus.C_940087
Daphnia pulex
estExt_Genewise1Plus.C_940087
N
0.000
e_gw1.462.21.1
Capitella teleta
e_gw1.462.21.1
N
0.000
CG14641
Drosophila melanogaster
FBgn0037220
N
0.000
GA13140-RA
Drosophila pseudoobscura
FBgn0073177
N
0.000
GF17279
Drosophila ananassae
FBgn0094297
N
0.000
GG11763
Drosophila erecta
FBgn0104058
N
0.000
GH21879
Drosophila grimshawi
FBgn0129340
N
0.000
GI21935
Drosophila mojavensis
FBgn0144664
N
0.000
GL12337
Drosophila persimilis
FBgn0149944
N
0.000
GM10722
Drosophila sechellia
FBgn0165668
N
0.000
GD19696
Drosophila simulans
FBgn0191187
N
0.000
GJ14294
Drosophila virilis
FBgn0201509
N
0.000
GE25369
Drosophila yakuba
FBgn0242446
N
0.000
gw.38.22.1
Branchiostoma floridae
gw.38.22.1
N
0.000