CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPIJ014747
(
Culex quinquefasciatus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
CPIJ014747
T00432_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPIJ014747-PA
CCCH ZF
165
186
ICSFWVKGECKRGEECPYRHDK
CPIJ014747-PA
RRM
235
300
LYVGNLGEHITEVDIRDNFYHYGEIRSVSLVPRQQCAFVQYTKRSAAELAAEKTFNKLVLGGKKLT
Links
Other
CCCH ZF,RRM
family RBPs
Other
Culex quinquefasciatus
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ014747
Culex pipiens
CpipJ_CPIJ014747
N
1.000
AGAP004509
Anopheles gambiae
AGAP004509
N
0.989
AAEL011251
Aedes aegypti
AAEL011251
N
0.977
GH21879
Drosophila grimshawi
FBgn0129340
N
0.820
GJ14294
Drosophila virilis
FBgn0201509
N
0.820
GA13140-RA
Drosophila pseudoobscura
FBgn0073177
N
0.809
GK11018
Drosophila willistoni
FBgn0213029
N
0.809
GL12337
Drosophila persimilis
FBgn0149944
N
0.809
GI21935
Drosophila mojavensis
FBgn0144664
N
0.809
GG11763
Drosophila erecta
FBgn0104058
N
0.798
GF17279
Drosophila ananassae
FBgn0094297
N
0.798
GE25369
Drosophila yakuba
FBgn0242446
N
0.798
GM10722
Drosophila sechellia
FBgn0165668
N
0.798
CG14641
Drosophila melanogaster
FBgn0037220
N
0.798
GD19696
Drosophila simulans
FBgn0191187
N
0.798
amel4_ncbi_hmm34588
Apis mellifera
amel4_ncbi_hmm34588
N
0.787
nasonia_NCBI_hmm370054
Nasonia vitripennis
nasonia_NCBI_hmm370054
N
0.730
e_gw1.462.21.1
Capitella teleta
e_gw1.462.21.1
N
0.722
ISCW021094
Ixodes scapularis
ISCW021094
N
0.719
estExt_Genewise1Plus.C_940087
Daphnia pulex
estExt_Genewise1Plus.C_940087
N
0.716