CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ESRP1
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000001316
T39595_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ESRP2
M141_0.6
Homo sapiens
UGGGRAD
RNAcompete
Ray et al.(2013)
RNCMPT00150
0.731
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000001135
RRM
226
295
VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE
ENSOCUP00000001135
RRM
327
399
VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE
ENSOCUP00000001135
RRM
446
518
VRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVE
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
73 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH44002
Xenopus laevis
AAH44002
I
0.935
Ame_R011562
Ailuropoda melanoleuca
Ame_R011562
I
0.722
Ame_R015210
Ailuropoda melanoleuca
Ame_R015210
I
0.991
ESRP1
Anolis carolinensis
ENSACAG00000003748
I
0.926
ESRP2
Anolis carolinensis
ENSACAG00000009900
I
0.810
ESRP2
Bos taurus
ENSBTAG00000004375
I
0.722
LOC788414
Bos taurus
ENSBTAG00000021838
I
0.986
ESRP1
Canis familiaris
ENSCAFG00000009305
I
0.991
ESRP2
Canis familiaris
ENSCAFG00000020320
I
0.722
LOC100386717
Callithrix jacchus
ENSCJAG00000000043
I
0.991
LOC100388530
Callithrix jacchus
ENSCJAG00000015709
I
0.722
ESRP1
Cavia porcellus
ENSCPOG00000012197
I
0.995
esrp1
Danio rerio
ENSDARG00000011245
I
0.833
esrp2
Danio rerio
ENSDARG00000018814
I
0.824
ESRP2
Dasypus novemcinctus
ENSDNOG00000018588
I
0.778
Esrp2
Dipodomys ordii
ENSDORG00000000665
I
0.787
Esrp1
Dipodomys ordii
ENSDORG00000011987
N
0.824
ESRP1
Equus caballus
ENSECAG00000000784
I
0.991
LOC100066567
Equus caballus
ENSECAG00000017375
I
0.718
ESRP1
Erinaceus europaeus
ENSEEUG00000001673
I
0.968
ESRP2
Erinaceus europaeus
ENSEEUG00000014033
I
0.718
ESRP2
Echinops telfairi
ENSETEG00000006068
I
0.787
ESRP1
Felis catus
ENSFCAG00000009920
I
0.991
ESRP2
Felis catus
ENSFCAG00000010419
I
0.722
ESRP2
Homo sapiens
ENSG00000103067
D
0.731
ESRP1
Homo sapiens
ENSG00000104413
I
0.986
ESRP2
Gasterosteus aculeatus
ENSGACG00000016359
N
0.797
ESRP2_CHICK
Gallus gallus
ENSGALG00000003374
I
0.833
RBM35A
Gallus gallus
ENSGALG00000015968
I
0.926
ESRP1
Gorilla gorilla
ENSGGOG00000003627
I
0.986
ESRP2
Gorilla gorilla
ENSGGOG00000010150
I
0.731
ESRP1
Loxodonta africana
ENSLAFG00000001498
I
0.995
ESRP2
Loxodonta africana
ENSLAFG00000014609
I
0.769
ESRP2
Macropus eugenii
ENSMEUG00000014322
I
0.829
ESRP2
Meleagris gallopavo
ENSMGAG00000003943
I
0.833
ESRP1
Meleagris gallopavo
ENSMGAG00000012042
I
0.926
ESRP1
Microcebus murinus
ENSMICG00000008757
I
0.995
ESRP2
Microcebus murinus
ENSMICG00000011382
I
0.708
ESRP1
Myotis lucifugus
ENSMLUG00000001816
N
0.810
ESRP2
Myotis lucifugus
ENSMLUG00000005934
I
0.778
ESRP1
Macaca mulatta
ENSMMUG00000021112
I
0.977
ESRP2
Macaca mulatta
ENSMMUG00000021846
I
0.722
ESRP2
Monodelphis domestica
ENSMODG00000005183
I
0.801
ESRP1
Monodelphis domestica
ENSMODG00000007268
I
0.972
Esrp1
Mus musculus
ENSMUSG00000040728
I
0.981
Esrp2
Mus musculus
ENSMUSG00000084128
I
0.718
ESRP1
Ornithorhynchus anatinus
ENSOANG00000004746
I
0.977
ESRP2
Ornithorhynchus anatinus
ENSOANG00000010972
I
0.782
ESRP2
Oryctolagus cuniculus
ENSOCUG00000001242
I
0.722
ESRP1
Ochotona princeps
ENSOPRG00000010595
N
0.824
ESRP2
Ochotona princeps
ENSOPRG00000013401
I
0.764
ESRP2
Procavia capensis
ENSPCAG00000005215
I
0.782
ENSPPYG00000007484
Pongo pygmaeus
ENSPPYG00000007484
I
0.727
ENSPPYG00000018753
Pongo pygmaeus
ENSPPYG00000018753
I
0.986
ESRP2
Pan troglodytes
ENSPTRG00000008261
I
0.727
ESRP1
Pan troglodytes
ENSPTRG00000020430
I
0.986
ESRP1
Pteropus vampyrus
ENSPVAG00000014513
I
0.991
RGD1560481
Rattus norvegicus
ENSRNOG00000008184
I
0.991
Esrp2
Rattus norvegicus
ENSRNOG00000023177
I
0.773
ESRP2
Sorex araneus
ENSSARG00000014176
I
0.773
ESRP1
Sus scrofa
ENSSSCG00000006099
I
0.991
RBM35B
Taeniopygia guttata
ENSTGUG00000006986
I
0.824
RBM35A
Taeniopygia guttata
ENSTGUG00000011907
I
0.935
ESRP1
Tetraodon nigroviridis
ENSTNIG00000018367
N
0.761
ESRP1
Takifugu rubripes
ENSTRUG00000009287
N
0.757
ESRP1
Tarsius syrichta
ENSTSYG00000006036
I
0.986
ESRP1
Tursiops truncatus
ENSTTRG00000004226
I
0.981
ESRP2
Tursiops truncatus
ENSTTRG00000014613
I
0.718
ESRP1
Vicugna pacos
ENSVPAG00000006566
I
0.991
esrp1
Xenopus tropicalis
ENSXETG00000014667
I
0.935
estExt_gwp.C_3900044
Branchiostoma floridae
estExt_gwp.C_3900044
N
0.708
estExt_gwp.C_3900052
Branchiostoma floridae
estExt_gwp.C_3900052
N
0.708
Q7ZY29
Xenopus laevis
Q7ZY29
I
0.935