RGD1560481 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000008184 T41057_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ESRP2
M141_0.6 		Homo sapiens UGGGRAD RNAcompete
Ray et al.(2013)
RNCMPT00150 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000010846 RRM 227 296
ENSRNOP00000010846 RRM 328 400
ENSRNOP00000010846 RRM 447 519
ENSRNOP00000062211 RRM 227 296
ENSRNOP00000062211 RRM 328 400
ENSRNOP00000062211 RRM 447 519
ENSRNOP00000063046 RRM 227 296
ENSRNOP00000063046 RRM 328 400
ENSRNOP00000063046 RRM 447 519
ENSRNOP00000063191 RRM 67 136
ENSRNOP00000063191 RRM 168 240
ENSRNOP00000063191 RRM 287 359

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Esrp1 Mus musculus ENSMUSG00000040728 I 0.991
ESRP1 Oryctolagus cuniculus ENSOCUG00000001316 I 0.991
ESRP1 Cavia porcellus ENSCPOG00000012197 I 0.986
ESRP1 Microcebus murinus ENSMICG00000008757 I 0.986
ESRP1 Loxodonta africana ENSLAFG00000001498 I 0.986
ESRP1 Canis familiaris ENSCAFG00000009305 I 0.981
Ame_R015210 Ailuropoda melanoleuca Ame_R015210 I 0.981
ESRP1 Felis catus ENSFCAG00000009920 I 0.981
ESRP1 Vicugna pacos ENSVPAG00000006566 I 0.981
LOC100386717 Callithrix jacchus ENSCJAG00000000043 I 0.981
ESRP1 Equus caballus ENSECAG00000000784 I 0.981
ESRP1 Pteropus vampyrus ENSPVAG00000014513 I 0.981
ESRP1 Sus scrofa ENSSSCG00000006099 I 0.981
ESRP1 Tarsius syrichta ENSTSYG00000006036 I 0.977
LOC788414 Bos taurus ENSBTAG00000021838 I 0.977
ENSPPYG00000018753 Pongo pygmaeus ENSPPYG00000018753 I 0.977
ESRP1 Gorilla gorilla ENSGGOG00000003627 I 0.977
ESRP1 Homo sapiens ENSG00000104413 I 0.977
ESRP1 Pan troglodytes ENSPTRG00000020430 I 0.977
ESRP1 Tursiops truncatus ENSTTRG00000004226 I 0.972
ESRP1 Macaca mulatta ENSMMUG00000021112 I 0.968
ESRP1 Ornithorhynchus anatinus ENSOANG00000004746 I 0.968
ESRP1 Monodelphis domestica ENSMODG00000007268 I 0.963
ESRP1 Erinaceus europaeus ENSEEUG00000001673 I 0.958
esrp1 Xenopus tropicalis ENSXETG00000014667 I 0.926
RBM35A Taeniopygia guttata ENSTGUG00000011907 I 0.926
AAH44002 Xenopus laevis AAH44002 I 0.926
Q7ZY29 Xenopus laevis Q7ZY29 I 0.926
ESRP1 Anolis carolinensis ENSACAG00000003748 I 0.921
ESRP1 Meleagris gallopavo ENSMGAG00000012042 I 0.917
RBM35A Gallus gallus ENSGALG00000015968 I 0.917
ESRP2_CHICK Gallus gallus ENSGALG00000003374 I 0.824
ESRP2 Meleagris gallopavo ENSMGAG00000003943 I 0.824
esrp1 Danio rerio ENSDARG00000011245 I 0.824
ESRP2 Macropus eugenii ENSMEUG00000014322 I 0.819
ESRP1 Ochotona princeps ENSOPRG00000010595 N 0.815
esrp2 Danio rerio ENSDARG00000018814 I 0.815
Esrp1 Dipodomys ordii ENSDORG00000011987 N 0.815
RBM35B Taeniopygia guttata ENSTGUG00000006986 I 0.815
ESRP2 Anolis carolinensis ENSACAG00000009900 I 0.806
ESRP1 Myotis lucifugus ENSMLUG00000001816 N 0.801
ESRP2 Gasterosteus aculeatus ENSGACG00000016359 N 0.793
ESRP2 Monodelphis domestica ENSMODG00000005183 I 0.792
Esrp2 Dipodomys ordii ENSDORG00000000665 I 0.778
ESRP2 Echinops telfairi ENSETEG00000006068 I 0.778
ESRP2 Procavia capensis ENSPCAG00000005215 I 0.773
ESRP2 Ornithorhynchus anatinus ENSOANG00000010972 I 0.773
Esrp2 Rattus norvegicus ENSRNOG00000023177 I 0.769
ESRP2 Myotis lucifugus ENSMLUG00000005934 I 0.769
ESRP2 Dasypus novemcinctus ENSDNOG00000018588 I 0.769
ESRP2 Sorex araneus ENSSARG00000014176 I 0.764
ESRP1 Tetraodon nigroviridis ENSTNIG00000018367 N 0.761
ESRP2 Loxodonta africana ENSLAFG00000014609 I 0.759
ESRP2 Ochotona princeps ENSOPRG00000013401 I 0.759
ESRP1 Takifugu rubripes ENSTRUG00000009287 N 0.757
ESRP2 Homo sapiens ENSG00000103067 D 0.722
ESRP2 Gorilla gorilla ENSGGOG00000010150 I 0.722
ESRP2 Pan troglodytes ENSPTRG00000008261 I 0.718
ESRP2 Oryctolagus cuniculus ENSOCUG00000001242 I 0.718
ENSPPYG00000007484 Pongo pygmaeus ENSPPYG00000007484 I 0.718
ESRP2 Felis catus ENSFCAG00000010419 I 0.713
ESRP2 Bos taurus ENSBTAG00000004375 I 0.713
Ame_R011562 Ailuropoda melanoleuca Ame_R011562 I 0.713
ESRP2 Canis familiaris ENSCAFG00000020320 I 0.713
LOC100388530 Callithrix jacchus ENSCJAG00000015709 I 0.713
ESRP2 Macaca mulatta ENSMMUG00000021846 I 0.713
Esrp2 Mus musculus ENSMUSG00000084128 I 0.713
ESRP2 Erinaceus europaeus ENSEEUG00000014033 I 0.708
LOC100066567 Equus caballus ENSECAG00000017375 I 0.708
ESRP2 Tursiops truncatus ENSTTRG00000014613 I 0.708
estExt_gwp.C_3900052 Branchiostoma floridae estExt_gwp.C_3900052 N 0.704
estExt_gwp.C_3900044 Branchiostoma floridae estExt_gwp.C_3900044 N 0.704