ENSPPYG00000001506 (Pongo pygmaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPPYG00000001506 T40437_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		1.000
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.878
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.878
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.878
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000001741 RRM 13 83
ENSPPYP00000001741 RRM 101 169
ENSPPYP00000001741 RRM 193 262
ENSPPYP00000001741 RRM 296 364

Links

Other RRM family RBPs
Other Pongo pygmaeus RBPs

178 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30170.m013634 Ricinus communis 30170.m013634 N 0.000
cassava35924.valid.m1 Manihot esculenta cassava35924.valid.m1 N 0.000
Cucsa.312350 Cucumis sativus Cucsa.312350 N 0.000
GSVIVG00009261001 Vitis vinifera GSVIVG00009261001 N 0.000
MDP0000194087 Malus x domestica MDP0000194087 N 0.000
MDP0000209210 Malus x domestica MDP0000209210 N 0.000
MDP0000258801 Malus x domestica MDP0000258801 N 0.000
MDP0000260868 Malus x domestica MDP0000260868 N 0.000
PK08796.1 Cannabis sativa PK08796.1 N 0.000
B9GNA5_POPTR Populus trichocarpa POPTR_0002s11290 N 0.000