PABPN1 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000002023 T41397_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000002211 RRM 174 243

Links

Other RRM family RBPs
Other Sus scrofa RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R016026 Ailuropoda melanoleuca Ame_R016026 N 0.000
CpipJ_CPIJ002248 Culex pipiens CpipJ_CPIJ002248 N 0.000
Ybx1 Dipodomys ordii ENSDORG00000016627 N 0.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.000
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 N 0.000
YBX1 Tupaia belangeri ENSTBEG00000015642 N 0.000
ybx2 Xenopus tropicalis ENSXETG00000025267 N 0.000