CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CpipJ_CPIJ002248
(
Culex pipiens
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
CpipJ_CPIJ002248
T16664_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CpipJ_CPIJ002248-RA
CSD
3
44
SYTTIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGP
Links
Other
CSD
family RBPs
Other
Culex pipiens
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ002248
Culex quinquefasciatus
CPIJ002248
N
1.000
ybx2
Xenopus tropicalis
ENSXETG00000025267
N
0.762
YBX1
Tupaia belangeri
ENSTBEG00000015642
N
0.738
YBX1
Ornithorhynchus anatinus
ENSOANG00000011725
I
0.738
Ybx1
Dipodomys ordii
ENSDORG00000016627
N
0.738
Ame_R016026
Ailuropoda melanoleuca
Ame_R016026
N
0.738
ENSOCUG00000024588
Oryctolagus cuniculus
ENSOCUG00000024588
N
0.705