CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ESRP1
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000018367
T42174_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000021536
RRM
227
296
IRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIE
ENSTNIP00000021536
RRM
328
406
IRMRGLPFTATHEQVLSFFSPGEGLKGTCPVSGGKDGILFVRYPDGRPTGDAFVLFACEEHAQCALRKHKEILGRRYIE
ENSTNIP00000021536
RRM
455
525
LRLRGLPYTAIIEDILNFLGEFTRDVRPHGVHMVLNQQGRPSGDCFIQMTSVEQALQAAQQLHKQVMFSQR
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
52 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB04189.1
Alternaria brassicicola
AB04189.1
N
0.000
ARB_03225
Arthroderma benhamiae
ARB_03225
N
0.000
ACLA_075320
Aspergillus clavatus
CADACLAG00006833
N
0.000
AFLA_003440
Aspergillus flavus
CADAFLAG00010410
N
0.000
AFUA_2G16400
Aspergillus fumigatus
CADAFUAG00004230
N
0.000
An15g06790
Aspergillus niger
CADANGAG00012358
N
0.000
ANIA_07350
Aspergillus nidulans
CADANIAG00000083
N
0.000
AO090102000222
Aspergillus oryzae
CADAORAG00009578
N
0.000
ATEG_02298
Aspergillus terreus
CADATEAG00000182
N
0.000
NFIA_091670
Neosartorya fischeri
CADNFIAG00006889
N
0.000
EAT82319.2
Phaeosphaeria nodorum
EAT82319.2
N
0.000
estExt_fgenesh1_pg.C_180055
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_180055
N
0.000
fgenesh1_pg.00815_#_18
Aspergillus carbonarius
fgenesh1_pg.00815_#_18
N
0.000
HCAG_06478
Histoplasma capsulatum
HCAG_06478
N
0.000
MCYG_03836
Microsporum canis
MCYG_03836
N
0.000
MGYG_07815
Microsporum gypseum
MGYG_07815
N
0.000
PMAA_034530
Penicillium marneffei
PMAA_034530
N
0.000
PTRG_05566
Pyrenophora tritici repentis
PTRG_05566
N
0.000
TEQG_03246
Trichophyton equinum
TEQG_03246
N
0.000
TERG_05285
Trichophyton rubrum
TERG_05285
N
0.000
TESG_04321
Trichophyton tonsurans
TESG_04321
N
0.000
TRV_02454
Trichophyton verrucosum
TRV_02454
N
0.000
UREG_04821
Uncinocarpus reesii
UREG_04821
N
0.000