SNAPOd2T00004354001 (Oikopleura dioica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 SNAPOd2T00004354001 T48338_0.6 Genoscope (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00004354001 RRM 239 309

Links

Other RRM family RBPs
Other Oikopleura dioica RBPs

156 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ARB_04672 Arthroderma benhamiae ARB_04672 N 0.718
BDBG_04009 Blastomyces dermatitidis BDBG_04009 N 0.732
ACLA_065360 Aspergillus clavatus CADACLAG00006149 N 0.732
AFLA_071340 Aspergillus flavus CADAFLAG00008558 N 0.732
AFUA_7G02170 Aspergillus fumigatus CADAFUAG00001177 N 0.732
An12g00490 Aspergillus niger CADANGAG00009498 N 0.732
ANIA_09095 Aspergillus nidulans CADANIAG00009519 N 0.746
AO090038000594 Aspergillus oryzae CADAORAG00009343 N 0.732
NFIA_114890 Neosartorya fischeri CADNFIAG00010434 N 0.732
CIMG_07762 Coccidioides immitis CIMG_07762 N 0.732
CNBG_1409 Cryptococcus neoformans CNBG_1409 N 0.000
CPSG_09333 Coccidioides posadasii CPSG_09333 N 0.732
ppil4 Danio rerio ENSDARG00000043854 N 0.789
PPIL4 Gasterosteus aculeatus ENSGACG00000006639 N 0.761
PPIL4 Gallus gallus ENSGALG00000012364 N 0.775
PPIL4 Meleagris gallopavo ENSMGAG00000012596 N 0.775
ENSOANG00000001063 Ornithorhynchus anatinus ENSOANG00000001063 N 0.775
PPIL4 Oryzias latipes ENSORLG00000015310 N 0.775
PPIL4 Tetraodon nigroviridis ENSTNIG00000002706 N 0.789
PPIL4 Takifugu rubripes ENSTRUG00000006670 N 0.775
ppil4 Xenopus tropicalis ENSXETG00000021385 N 0.789
estExt_fgeneshCV_pg.C_40316 Chlorella vulgaris estExt_fgeneshCV_pg.C_40316 N 0.000
estExt_Genewise1Plus.C_11662 Tremella mesenterica estExt_Genewise1Plus.C_11662 N 0.000
estExt_Genewise1Plus.C_61472 Cryphonectria parasitica estExt_Genewise1Plus.C_61472 N 0.746
estExt_Genewise1Plus.C_chr_40303 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_40303 N 0.761
estExt_GeneWisePlus.C_270056 Trichoderma reesei estExt_GeneWisePlus.C_270056 N 0.000
e_gw.42.57.1 Nematostella vectensis e_gw.42.57.1 N 0.803
e_gw1.11.236.1 Trichoderma atroviride e_gw1.11.236.1 N 0.000
e_gw1.4.423.1 Coccomyxa C 169 e_gw1.4.423.1 N 0.000
e_gw1.6.80.1 Monosiga brevicollis e_gw1.6.80.1 N 0.732
fgenesh1_pm.00868_#_101 Aspergillus carbonarius fgenesh1_pm.00868_#_101 N 0.732
fgenesh1_pm.C_scaffold_3000471 Trichoderma virens fgenesh1_pm.C_scaffold_3000471 N 0.000
fgenesh1_pm.sca_11_chr8_3_0000173 Nectria haematococca fgenesh1_pm.sca_11_chr8_3_0000173 N 0.704
FGSG_04479 Fusarium graminearum FGSG_04479 N 0.704
FOXG_13736 Fusarium oxysporum FOXG_13736 N 0.718
FVEG_11166 Fusarium verticillioides FVEG_11166 N 0.718
GSTUMT00009813001 Tuber melanosporum GSTUMT00009813001 N 0.718
HCAG_04417 Histoplasma capsulatum HCAG_04417 N 0.732
LOAG_08216 Loa loa LOAG_08216 N 0.761
MCYG_06073 Microsporum canis MCYG_06073 N 0.718
MGG_10681 Magnaporthe oryzae MGG_10681 N 0.718
MGYG_05886 Microsporum gypseum MGYG_05886 N 0.718
PABG_01156 Paracoccidioides brasiliensis PABG_01156 N 0.732
Pc21g11960 Penicillium chrysogenum Pc21g11960 N 0.732
PMAA_010740 Penicillium marneffei PMAA_010740 N 0.718
PTSG_07932 Salpingoeca rosetta PTSG_07932 N 0.732
SJAG_00470 Schizosaccharomyces japonicus SJAG_00470 N 0.718
SPOG_01415 Schizosaccharomyces cryophilus SPOG_01415 N 0.718
TEQG_07016 Trichophyton equinum TEQG_07016 N 0.718
TERG_06028 Trichophyton rubrum TERG_06028 N 0.718
TGGT1_083150 Toxoplasma gondii TGGT1_083150 N 0.000
TGME49_027850 Toxoplasma gondii TGME49_027850 N 0.000
TGVEG_068650 Toxoplasma gondii TGVEG_068650 N 0.000
TRV_03115 Trichophyton verrucosum TRV_03115 N 0.718
UREG_02113 Uncinocarpus reesii UREG_02113 N 0.732
VDAG_02606 Verticillium dahliae VDAG_02606 N 0.704
WUBG_04730 Wuchereria bancrofti WUBG_04730 N 0.789