CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
PTTG_06854
(
Puccinia triticina
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PTTG_06854
T30382_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PTTG_06854T0
RRM
230
300
LFVCKLNPITRSEDLELIFSRFGPIPSCEVIKDPKTQDSLQYAFIEFDQREGAERAYFKMDGVLIDDRRIH
Links
Other
RRM
family RBPs
Other
Puccinia triticina
RBPs
148 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_kg.C_40083
Melampsora laricis populina
estExt_fgenesh1_kg.C_40083
N
0.915
PGTG_10482
Puccinia graminis
PGTG_10482
N
0.915
PGTG_14680
Puccinia graminis
PGTG_14680
N
0.887
PTTG_06503
Puccinia triticina
PTTG_06503
N
0.817
estExt_fgenesh3_pg.C_910016
Postia placenta
estExt_fgenesh3_pg.C_910016
N
0.803
estExt_Genewise1Plus.C_chr_40303
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_40303
N
0.803
UM03490
Ustilago maydis
UM03490
N
0.803
83285
Helobdella robusta
83285
N
0.803
fgenesh1_pm.C_scaffold_1000049
Schizophyllum commune
fgenesh1_pm.C_scaffold_1000049
N
0.789
fgenesh1_pm.C_scaffold_9000117
Mycosphaerella fijiensis
fgenesh1_pm.C_scaffold_9000117
N
0.789
estExt_Genewise1.C_30053
Myceliophthora thermophila
estExt_Genewise1.C_30053
N
0.789
e_gw1.4.370.1
Sporobolomyces roseus
e_gw1.4.370.1
N
0.789
SPPG_03169
Spizellomyces punctatus
SPPG_03169
N
0.775
e_gww2.22.65.1
Phanerochaete chrysosporium
e_gww2.22.65.1
N
0.775
e_gww1.4.788.1
Laccaria bicolor
e_gww1.4.788.1
N
0.775
gw1.13.70.1
Lottia gigantea
gw1.13.70.1
N
0.775
e_gw1.4.2113.1
Pleurotus ostreatus
e_gw1.4.2113.1
N
0.775
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA
Heterobasidion annosum
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA
N
0.775
estExt_Genewise1Plus.C_11662
Tremella mesenterica
estExt_Genewise1Plus.C_11662
N
0.775
estExt_fgenesh2_kg.C_140159
Agaricus bisporus
estExt_fgenesh2_kg.C_140159
N
0.775
Aqu1.223583
Amphimedon queenslandica
Aqu1.223583
N
0.775
e_gw.42.57.1
Nematostella vectensis
e_gw.42.57.1
N
0.775
e_gw1.20.215.1
Phycomyces blakesleeanus
e_gw1.20.215.1
N
0.761
estExt_Genewise1.C_23809
Thielavia terrestris
estExt_Genewise1.C_23809
N
0.761
estExt_Genewise1Plus.C_12820
Neurospora discreta
estExt_Genewise1Plus.C_12820
N
0.761
CNBG_1409
Cryptococcus neoformans
CNBG_1409
N
0.761
MGG_10681
Magnaporthe oryzae
MGG_10681
N
0.761
PPIL4
Taeniopygia guttata
ENSTGUG00000010655
N
0.761
PPIL4
Takifugu rubripes
ENSTRUG00000006670
N
0.761
gw1.1.256.1
Neurospora tetrasperma
gw1.1.256.1
N
0.761
EAT81165.2
Phaeosphaeria nodorum
EAT81165.2
N
0.761
XP_001180629.1
Strongylocentrotus purpuratus
XP_001180629.1
N
0.761
PMAA_010740
Penicillium marneffei
PMAA_010740
N
0.761
Pa_2_13850
Podospora anserina
Pa_2_13850
N
0.761
fgenesh2_pm.4_#_1016
Serpula lacrymans
fgenesh2_pm.4_#_1016
N
0.761
XP_001192414.1
Strongylocentrotus purpuratus
XP_001192414.1
N
0.761
XP_787384.2
Strongylocentrotus purpuratus
XP_787384.2
N
0.761
XP_782627.2
Strongylocentrotus purpuratus
XP_782627.2
N
0.761
PPIL4
Meleagris gallopavo
ENSMGAG00000012596
N
0.761
NCU10166
Neurospora crassa
NCU10166
N
0.761
PPIL4
Gallus gallus
ENSGALG00000012364
N
0.761
PPIL4
Anolis carolinensis
ENSACAG00000006936
N
0.761
PTRG_04608
Pyrenophora tritici repentis
PTRG_04608
N
0.761
SNOG_11457
Stagonospora nodorum
SNOG_11457
N
0.761
PPIL4
Loxodonta africana
ENSLAFG00000026804
N
0.746
estExt_Genewise1Plus.C_61472
Cryphonectria parasitica
estExt_Genewise1Plus.C_61472
N
0.746
An12g00490
Aspergillus niger
CADANGAG00009498
N
0.746
AFUA_7G02170
Aspergillus fumigatus
CADAFUAG00001177
N
0.746
TRV_03115
Trichophyton verrucosum
TRV_03115
N
0.746
fgenesh1_pm.00868_#_101
Aspergillus carbonarius
fgenesh1_pm.00868_#_101
N
0.746
A6QP53_BOVIN
Bos taurus
ENSBTAG00000016980
N
0.746
ANIA_09095
Aspergillus nidulans
CADANIAG00009519
N
0.746
PPIL4
Homo sapiens
ENSG00000131013
N
0.746
estExt_fgenesh1_kg.C_170006
Cochliobolus heterostrophus C5
estExt_fgenesh1_kg.C_170006
N
0.746
cyp6
Schizosaccharomyces pombe
SPBC17G9.05
N
0.746
TERG_06028
Trichophyton rubrum
TERG_06028
N
0.746
AB03196.1
Alternaria brassicicola
AB03196.1
N
0.746
CHGG_06839
Chaetomium globosum
CHGG_06839
N
0.746
BDBG_04009
Blastomyces dermatitidis
BDBG_04009
N
0.746
UREG_02113
Uncinocarpus reesii
UREG_02113
N
0.746
ARB_04672
Arthroderma benhamiae
ARB_04672
N
0.746
Ame_R008665
Ailuropoda melanoleuca
Ame_R008665
N
0.746
estExt_Genewise1Plus.C_40228
Batrachochytrium dendrobatidis
estExt_Genewise1Plus.C_40228
N
0.746
TEQG_07016
Trichophyton equinum
TEQG_07016
N
0.746
Q6JDI1_CANFA
Canis familiaris
ENSCAFG00000000379
N
0.746
PPIL4
Equus caballus
ENSECAG00000021819
N
0.746
CIMG_07762
Coccidioides immitis
CIMG_07762
N
0.746
PABG_01156
Paracoccidioides brasiliensis
PABG_01156
N
0.746
PPIL4
Cavia porcellus
ENSCPOG00000014614
N
0.746
CPSG_09333
Coccidioides posadasii
CPSG_09333
N
0.746
PPIL4
Ochotona princeps
ENSOPRG00000005619
N
0.746
PPIL4
Otolemur garnettii
ENSOGAG00000014153
N
0.746
SJAG_00470
Schizosaccharomyces japonicus
SJAG_00470
N
0.746
PPIL4
Procavia capensis
ENSPCAG00000008203
N
0.746
PPIL4
Pan troglodytes
ENSPTRG00000018692
N
0.746
PPIL4
Oryctolagus cuniculus
ENSOCUG00000007696
N
0.746
ENSOANG00000001063
Ornithorhynchus anatinus
ENSOANG00000001063
N
0.746
PPIL4
Myotis lucifugus
ENSMLUG00000002766
N
0.746
PPIL4
Microcebus murinus
ENSMICG00000006287
N
0.746
PPIL4
Macaca mulatta
ENSMMUG00000023067
N
0.746
PPIL4
Monodelphis domestica
ENSMODG00000016825
N
0.746
Ppil4
Mus musculus
ENSMUSG00000015757
N
0.746
PPIL4
Pteropus vampyrus
ENSPVAG00000000746
N
0.746
Ppil4
Rattus norvegicus
ENSRNOG00000015552
N
0.746
MCYG_06073
Microsporum canis
MCYG_06073
N
0.746
PPIL4
Gasterosteus aculeatus
ENSGACG00000006639
N
0.746
HCAG_04417
Histoplasma capsulatum
HCAG_04417
N
0.746
FVEG_11166
Fusarium verticillioides
FVEG_11166
N
0.746
FGSG_04479
Fusarium graminearum
FGSG_04479
N
0.746
FOXG_13736
Fusarium oxysporum
FOXG_13736
N
0.746
PPIL4
Vicugna pacos
ENSVPAG00000005157
N
0.746
PPIL4
Tursiops truncatus
ENSTTRG00000006014
N
0.746
PPIL4
Sorex araneus
ENSSARG00000011244
N
0.746
MGYG_05886
Microsporum gypseum
MGYG_05886
N
0.746
PPIL4
Gorilla gorilla
ENSGGOG00000009686
N
0.746
NFIA_114890
Neosartorya fischeri
CADNFIAG00010434
N
0.746
PPIL4
Tetraodon nigroviridis
ENSTNIG00000002706
N
0.746
BC1G_10007
Botrytis cinerea
BC1G_10007
N
0.732
GSTUMT00009813001
Tuber melanosporum
GSTUMT00009813001
N
0.732
nasonia_NCBI_hmm783174
Nasonia vitripennis
nasonia_NCBI_hmm783174
N
0.732
BGIBMGA008977
Bombyx mori
BGIBMGA008977
N
0.732
e_gw1.6.80.1
Monosiga brevicollis
e_gw1.6.80.1
N
0.732
RO3G_06974
Rhizopus oryzae
RO3G_06974
N
0.732
PPIL4
Erinaceus europaeus
ENSEEUG00000000959
N
0.732
WUBG_04730
Wuchereria bancrofti
WUBG_04730
N
0.732
SNAPOd2T00004354001
Oikopleura dioica
SNAPOd2T00004354001
N
0.732
PHUM268300
Pediculus humanus
PHUM268300
N
0.732
PPIL4
Oryzias latipes
ENSORLG00000015310
N
0.732
Pc21g11960
Penicillium chrysogenum
Pc21g11960
N
0.732
AO090038000594
Aspergillus oryzae
CADAORAG00009343
N
0.732
estExt_Genewise1.C_180101
Capitella teleta
estExt_Genewise1.C_180101
N
0.732
fgenesh1_pm.sca_11_chr8_3_0000173
Nectria haematococca
fgenesh1_pm.sca_11_chr8_3_0000173
N
0.732
fgeneshTA2_pg.C_scaffold_8000290
Trichoplax adhaerens
fgeneshTA2_pg.C_scaffold_8000290
N
0.732
ACLA_065360
Aspergillus clavatus
CADACLAG00006149
N
0.732
VDAG_02606
Verticillium dahliae
VDAG_02606
N
0.732
AFLA_071340
Aspergillus flavus
CADAFLAG00008558
N
0.732
estExt_Genewise1Plus.C_40585
Mucor circinelloides
estExt_Genewise1Plus.C_40585
N
0.732
SPOG_01415
Schizosaccharomyces cryophilus
SPOG_01415
N
0.718
estExt_fgenesh2_pm.C_1170007
Branchiostoma floridae
estExt_fgenesh2_pm.C_1170007
N
0.718
VDBG_02138
Verticillium albo atrum
VDBG_02138
N
0.718
estExt_GeneWisePlus.C_270056
Trichoderma reesei
estExt_GeneWisePlus.C_270056
N
0.718
e_gw1.11.236.1
Trichoderma atroviride
e_gw1.11.236.1
N
0.718
ENSCSAVG00000010619
Ciona savignyi
ENSCSAVG00000010619
N
0.718
ppil4
Xenopus tropicalis
ENSXETG00000021385
N
0.718
ppil4
Danio rerio
ENSDARG00000043854
N
0.718
PredSwiss_ASS2010_933.2
Pneumocystis carinii
PredSwiss_ASS2010_933.2
N
0.718
fgenesh1_pm.C_scaffold_3000471
Trichoderma virens
fgenesh1_pm.C_scaffold_3000471
N
0.718
amel4_ncbi_hmm35613
Apis mellifera
amel4_ncbi_hmm35613
N
0.718
Sjc_0091550
Schistosoma japonicum
Sjc_0091550
N
0.718
amel4_ncbi_hmm11961
Apis mellifera
amel4_ncbi_hmm11961
N
0.718
ATEG_01850
Aspergillus terreus
CADATEAG00001841
N
0.718
PredSwiss_CON599.3
Pneumocystis carinii
PredSwiss_CON599.3
N
0.718
PPIL4
Callithrix jacchus
ENSCJAG00000019613
N
0.708
GF18772
Drosophila ananassae
FBgn0095789
N
0.704
LOAG_08216
Loa loa
LOAG_08216
N
0.704
PPIL4
Spermophilus tridecemlineatus
ENSSTOG00000013980
N
0.704
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.704
PTSG_07932
Salpingoeca rosetta
PTSG_07932
N
0.704
GJ23668
Drosophila virilis
FBgn0210765
N
0.704
YALI0E31551g
Yarrowia lipolytica
YALI0E31551g
N
0.704
AGAP008136
Anopheles gambiae
AGAP008136
N
0.704
Smp_165540
Schistosoma mansoni
Smp_165540
N
0.704
GA26948-RA
Drosophila pseudoobscura
FBgn0248319
N
0.704
Minc10084
Meloidogyne incognita
Minc10084
N
0.704
GLRG_06614
Colletotrichum graminicola
GLRG_06614
N
0.704
GI24038
Drosophila mojavensis
FBgn0146761
N
0.704
GL13859
Drosophila persimilis
FBgn0151464
N
0.704
GH18460
Drosophila grimshawi
FBgn0125927
N
0.704