cassava12926.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava12926.valid.m1 T49117_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava12926.valid.m1 RRM 112 190

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT3G45630 Arabidopsis thaliana AT3G45630-TAIR-G N 0.709
AT5G60170 Arabidopsis thaliana AT5G60170-TAIR-G N 0.709
cassava12925.valid.m1 Manihot esculenta cassava12925.valid.m1 N 1.000
cassava13567.valid.m1 Manihot esculenta cassava13567.valid.m1 N 0.734
cassava801.valid.m1 Manihot esculenta cassava801.valid.m1 N 0.734
cassava802.valid.m1 Manihot esculenta cassava802.valid.m1 N 0.734
Cucsa.051650 Cucumis sativus Cucsa.051650 N 0.772
XM_002864625.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002022 N 0.709
XM_002877379.1 Arabidopsis lyrata fgenesh2_kg.5__939__AT3G45630.1 N 0.722
Glyma11g15670.1 Glycine max Glyma11g15670.1 N 0.759
Glyma12g07790.1 Glycine max Glyma12g07790.1 N 0.759
Glyma13g40460.1 Glycine max Glyma13g40460.1 N 0.759
Glyma15g04950.1 Glycine max Glyma15g04950.1 N 0.759
GSVIVG00025102001 Vitis vinifera GSVIVG00025102001 N 0.747
LjT39B13.150.nc Lotus japonicus LjT39B13.150.nc N 0.759
MDP0000213471 Malus x domestica MDP0000213471 N 0.759
MDP0000296717 Malus x domestica MDP0000296717 N 0.722
Medtr2g111500 Medicago truncatula Medtr2g111500 N 0.734
Medtr4g080070 Medicago truncatula Medtr4g080070 N 0.722
mgf016286m Mimulus guttatus mgf016286m N 0.747
mgf016475m Mimulus guttatus mgf016475m N 0.734
PK08517.1 Cannabis sativa PK08517.1 N 0.747
B9MT79_POPTR Populus trichocarpa POPTR_0006s13450 N 0.835
B9HPP2_POPTR Populus trichocarpa POPTR_0009s03130 N 0.747
B9IIZ2_POPTR Populus trichocarpa POPTR_0016s08560 N 0.861
ppa000664m Prunus persica ppa000664m N 0.747
ppa025065m Prunus persica ppa025065m N 0.734