CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G075942
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G075942
T54084_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G075942_P01
RRM
105
172
VYVGGLSSDVSSEDLKQLFESVGEVAEVRMRGKGDNKTYAFINFRTKEMALKAIQKLSNKDLKGKKIK
GRMZM2G075942_P01
RRM
182
251
LFIGNVPHDWTPDDFKTAVEEVGPGVLKVDLMKAPGSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDT
GRMZM2G075942_P01
RRM
276
345
LYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHFKERSMVMKALKNTERYELDGQLLD
GRMZM2G075942_P02
RRM
115
182
VYVGGLSSDVSSEDLKQLFESVGEVAEVRMRGKGDNKTYAFINFRTKEMALKAIQKLSNKDLKGKKIK
GRMZM2G075942_P02
RRM
192
261
LFIGNVPHDWTPDDFKTAVEEVGPGVLKVDLMKAPGSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDT
GRMZM2G075942_P02
RRM
286
355
LYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHFKERSMVMKALKNTERYELDGQLLD
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE033414
Oryza indica
BGIOSIBCE033414
N
0.732
BGIOSIBCE035668
Oryza indica
BGIOSIBCE035668
N
0.732
BRADI4G26487
Brachypodium distachyon
BRADI4G26487
N
0.732
GRMZM2G043150
Zea mays
GRMZM2G043150
N
0.803
GRMZM2G101867
Zea mays
GRMZM2G101867
N
0.942
LOC_Os11g04390
Oryza sativa
LOC_Os11g04390
N
0.732
LOC_Os12g04180
Oryza sativa
LOC_Os12g04180
N
0.732
PDK_20s1316982g002
Phoenix dactylifera
PDK_20s1316982g002
N
0.714
SB05G002300
Sorghum bicolor
Sb05g002300
N
0.957