fgeneshTA2_pg.C_scaffold_2000799 (Trichoplax adhaerens)
CCCH ZF,CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00098 (zf-CCHC) 		IPR000571
IPR001878 		fgeneshTA2_pg.C_scaffold_2000799 T00124_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshTA2_pg.C_scaffold_2000799 CCCH ZF 36 61
fgeneshTA2_pg.C_scaffold_2000799 CCCH ZF 63 88
fgeneshTA2_pg.C_scaffold_2000799 CCCH ZF 91 115
fgeneshTA2_pg.C_scaffold_2000799 CCCH ZF 119 143
fgeneshTA2_pg.C_scaffold_2000799 CCCH ZF 144 168
fgeneshTA2_pg.C_scaffold_2000799 CCHC ZF 189 206

Links

Other CCCH ZF,CCHC ZF family RBPs
Other Trichoplax adhaerens RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPSF4 Anolis carolinensis ENSACAG00000012941 N 0.753
CPSF4 Otolemur garnettii ENSOGAG00000010884 N 0.760
CPSF4 Ochotona princeps ENSOPRG00000013663 N 0.760
CPSF4 Oryzias latipes ENSORLG00000013743 N 0.753
ENSPPYG00000017378 Pongo pygmaeus ENSPPYG00000017378 N 0.753
CPSF4 Pan troglodytes ENSPTRG00000019453 N 0.760
CPSF4_RAT Rattus norvegicus ENSRNOG00000000985 N 0.760
Cpsf4 Rattus norvegicus ENSRNOG00000025217 N 0.753
CPSF4 Sorex araneus ENSSARG00000012416 N 0.760
CPSF4 Sus scrofa ENSSSCG00000007615 N 0.760
CPSF4 Tetraodon nigroviridis ENSTNIG00000006265 N 0.747
CPSF4 Takifugu rubripes ENSTRUG00000003524 N 0.747
cpsf4l Xenopus tropicalis ENSXETG00000004641 N 0.726
cpsf4 Xenopus tropicalis ENSXETG00000009892 N 0.767
AAH75128 Xenopus laevis AAH75128 N 0.767
CPSF4 Oryctolagus cuniculus ENSOCUG00000002437 N 0.760
CPSF4 Ornithorhynchus anatinus ENSOANG00000007729 N 0.760
Cpsf4 Mus musculus ENSMUSG00000029625 N 0.760
CPSF4_BOVIN Bos taurus ENSBTAG00000002090 N 0.760
CPSF4 Canis familiaris ENSCAFG00000015036 N 0.760
CPSF4 Cavia porcellus ENSCPOG00000001783 N 0.760
Cpsf4 Dipodomys ordii ENSDORG00000000742 N 0.760
LOC100059364 Equus caballus ENSECAG00000007525 N 0.760
CPSF4 Homo sapiens ENSG00000160917 N 0.760
CPSF4 Gallus gallus ENSGALG00000004714 N 0.760
CPSF4 Gorilla gorilla ENSGGOG00000015131 N 0.760
CPSF4 Loxodonta africana ENSLAFG00000000159 N 0.760
CPSF4 Macropus eugenii ENSMEUG00000006955 N 0.760
CPSF4 Meleagris gallopavo ENSMGAG00000004235 N 0.760
CPSF4 Microcebus murinus ENSMICG00000017429 N 0.760
CPSF4 Macaca mulatta ENSMMUG00000019191 N 0.760
CPSF4 Monodelphis domestica ENSMODG00000001367 N 0.760
Q6DJP7 Xenopus laevis Q6DJP7 N 0.767