CPSF4 (Oryzias latipes)
CCCH ZF,CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00098 (zf-CCHC) 		IPR000571
IPR001878 		ENSORLG00000013743 T00077_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000017235 CCCH ZF 36 60
ENSORLP00000017235 CCCH ZF 63 88
ENSORLP00000017235 CCCH ZF 91 116
ENSORLP00000017235 CCCH ZF 119 140
ENSORLP00000017235 CCCH ZF 143 168
ENSORLP00000017235 CCHC ZF 239 256
ENSORLP00000017236 CCCH ZF 36 60
ENSORLP00000017236 CCCH ZF 63 88
ENSORLP00000017236 CCCH ZF 91 116
ENSORLP00000017236 CCCH ZF 155 180
ENSORLP00000017236 CCHC ZF 255 272

Links

Other CCCH ZF,CCHC ZF family RBPs
Other Oryzias latipes RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPSF4 Tetraodon nigroviridis ENSTNIG00000006265 N 0.951
CPSF4 Loxodonta africana ENSLAFG00000000159 N 0.944
CPSF4 Macropus eugenii ENSMEUG00000006955 N 0.944
CPSF4 Gorilla gorilla ENSGGOG00000015131 N 0.944
CPSF4 Homo sapiens ENSG00000160917 N 0.944
CPSF4 Cavia porcellus ENSCPOG00000001783 N 0.944
LOC100059364 Equus caballus ENSECAG00000007525 N 0.944
CPSF4 Microcebus murinus ENSMICG00000017429 N 0.944
CPSF4_BOVIN Bos taurus ENSBTAG00000002090 N 0.944
CPSF4 Ornithorhynchus anatinus ENSOANG00000007729 N 0.944
CPSF4 Oryctolagus cuniculus ENSOCUG00000002437 N 0.944
Cpsf4 Mus musculus ENSMUSG00000029625 N 0.944
CPSF4 Monodelphis domestica ENSMODG00000001367 N 0.944
CPSF4 Macaca mulatta ENSMMUG00000019191 N 0.944
CPSF4 Ochotona princeps ENSOPRG00000013663 N 0.944
CPSF4 Canis familiaris ENSCAFG00000015036 N 0.944
CPSF4 Sus scrofa ENSSSCG00000007615 N 0.944
CPSF4 Pan troglodytes ENSPTRG00000019453 N 0.944
CPSF4_RAT Rattus norvegicus ENSRNOG00000000985 N 0.944
CPSF4 Sorex araneus ENSSARG00000012416 N 0.944
CPSF4 Takifugu rubripes ENSTRUG00000003524 N 0.944
ENSPPYG00000017378 Pongo pygmaeus ENSPPYG00000017378 N 0.937
CPSF4 Meleagris gallopavo ENSMGAG00000004235 N 0.937
CPSF4 Gallus gallus ENSGALG00000004714 N 0.937
Cpsf4 Dipodomys ordii ENSDORG00000000742 N 0.937
Cpsf4 Rattus norvegicus ENSRNOG00000025217 N 0.930
CPSF4 Otolemur garnettii ENSOGAG00000010884 N 0.930
cpsf4 Xenopus tropicalis ENSXETG00000009892 N 0.930
AAH75128 Xenopus laevis AAH75128 N 0.930
Q6DJP7 Xenopus laevis Q6DJP7 N 0.930
CPSF4 Anolis carolinensis ENSACAG00000012941 N 0.923
cpsf4l Xenopus tropicalis ENSXETG00000004641 N 0.818
fgeneshTA2_pg.C_scaffold_2000799 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000799 N 0.753
CPSF4 Tupaia belangeri ENSTBEG00000011406 N 0.727