CPSF4 (Takifugu rubripes)
CCCH ZF,CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00098 (zf-CCHC) 		IPR000571
IPR001878 		ENSTRUG00000003524 T00090_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000008268 CCCH ZF 36 60
ENSTRUP00000008268 CCCH ZF 63 88
ENSTRUP00000008268 CCCH ZF 91 116
ENSTRUP00000008268 CCCH ZF 119 136
ENSTRUP00000008268 CCCH ZF 153 178
ENSTRUP00000008268 CCHC ZF 247 264
ENSTRUP00000008269 CCCH ZF 36 60
ENSTRUP00000008269 CCCH ZF 63 88
ENSTRUP00000008269 CCCH ZF 91 116
ENSTRUP00000008269 CCCH ZF 119 140
ENSTRUP00000008269 CCCH ZF 143 168
ENSTRUP00000008269 CCHC ZF 218 235
ENSTRUP00000008270 CCCH ZF 36 60
ENSTRUP00000008270 CCCH ZF 63 88
ENSTRUP00000008270 CCCH ZF 91 109
ENSTRUP00000008270 CCCH ZF 111 136
ENSTRUP00000008270 CCHC ZF 186 203

Links

Other CCCH ZF,CCHC ZF family RBPs
Other Takifugu rubripes RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPSF4 Tetraodon nigroviridis ENSTNIG00000006265 N 0.993
CPSF4 Oryzias latipes ENSORLG00000013743 N 0.944
CPSF4 Macropus eugenii ENSMEUG00000006955 N 0.923
CPSF4 Loxodonta africana ENSLAFG00000000159 N 0.923
CPSF4 Gorilla gorilla ENSGGOG00000015131 N 0.923
CPSF4 Microcebus murinus ENSMICG00000017429 N 0.923
CPSF4 Monodelphis domestica ENSMODG00000001367 N 0.923
CPSF4 Oryctolagus cuniculus ENSOCUG00000002437 N 0.923
CPSF4 Ornithorhynchus anatinus ENSOANG00000007729 N 0.923
Cpsf4 Mus musculus ENSMUSG00000029625 N 0.923
CPSF4 Macaca mulatta ENSMMUG00000019191 N 0.923
LOC100059364 Equus caballus ENSECAG00000007525 N 0.923
CPSF4 Pan troglodytes ENSPTRG00000019453 N 0.923
CPSF4_RAT Rattus norvegicus ENSRNOG00000000985 N 0.923
CPSF4 Sorex araneus ENSSARG00000012416 N 0.923
CPSF4 Sus scrofa ENSSSCG00000007615 N 0.923
CPSF4 Homo sapiens ENSG00000160917 N 0.923
CPSF4_BOVIN Bos taurus ENSBTAG00000002090 N 0.923
CPSF4 Canis familiaris ENSCAFG00000015036 N 0.923
CPSF4 Cavia porcellus ENSCPOG00000001783 N 0.923
CPSF4 Ochotona princeps ENSOPRG00000013663 N 0.923
Cpsf4 Rattus norvegicus ENSRNOG00000025217 N 0.916
ENSPPYG00000017378 Pongo pygmaeus ENSPPYG00000017378 N 0.916
CPSF4 Meleagris gallopavo ENSMGAG00000004235 N 0.916
CPSF4 Gallus gallus ENSGALG00000004714 N 0.916
Cpsf4 Dipodomys ordii ENSDORG00000000742 N 0.916
CPSF4 Otolemur garnettii ENSOGAG00000010884 N 0.909
cpsf4 Xenopus tropicalis ENSXETG00000009892 N 0.902
AAH75128 Xenopus laevis AAH75128 N 0.902
Q6DJP7 Xenopus laevis Q6DJP7 N 0.902
CPSF4 Anolis carolinensis ENSACAG00000012941 N 0.902
cpsf4l Xenopus tropicalis ENSXETG00000004641 N 0.811
fgeneshTA2_pg.C_scaffold_2000799 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000799 N 0.747
CPSF4 Tupaia belangeri ENSTBEG00000011406 N 0.700