CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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U2AF1L4
(
Monodelphis domestica
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSMODG00000014003
T00561_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000017514
CCCH ZF
13
39
KDKVNCSFYFKIGACRHGDRCSRLHNK
ENSMODP00000017514
RRM
82
141
FEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVTELNNRWFNGQAVQ
ENSMODP00000017514
CCCH ZF
149
175
DFRESCCRQYEMGECTRGGFCNFMHLR
Links
Other
CCCH ZF,RRM
family RBPs
Other
Monodelphis domestica
RBPs
96 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG24692
Caenorhabditis briggsae
CBG24692
N
0.000
CJA05236
Caenorhabditis japonica
CJA05236
N
0.000
CJA09176
Caenorhabditis japonica
CJA09176
N
0.000
CJA10241
Caenorhabditis japonica
CJA10241
N
0.000
CJA17831
Caenorhabditis japonica
CJA17831
N
0.000
CJA28475
Caenorhabditis japonica
CJA28475
N
0.000
dct-10
Caenorhabditis elegans
Y38H6C.5
N
0.000