CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA17831
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA17831
T09741_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA17831
CCHC ZF
38
55
GECFYCGIPGHFANECRR
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA28475
Caenorhabditis japonica
CJA28475
N
1.000
CJA15255
Caenorhabditis japonica
CJA15255
N
1.000
CJA09176
Caenorhabditis japonica
CJA09176
N
0.944
CJA05236
Caenorhabditis japonica
CJA05236
N
0.889
CBG24692
Caenorhabditis briggsae
CBG24692
N
0.889
CJA10241
Caenorhabditis japonica
CJA10241
N
0.833
dct-10
Caenorhabditis elegans
Y38H6C.5
N
0.722