Medtr5g102170 (Medicago truncatula)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Medtr5g102170 T01031_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr5g102170.1 CCCH ZF 236 259
Medtr5g102170.1 RRM 396 456

Links

Other CCCH ZF,RRM family RBPs
Other Medicago truncatula RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK01281.1 Cannabis sativa PK01281.1 N 0.729
ppa003564m Prunus persica ppa003564m N 0.729
MDP0000906147 Malus x domestica MDP0000906147 N 0.701
MDP0000214614 Malus x domestica MDP0000214614 N 0.729
Glyma08g43790.1 Glycine max Glyma08g43790.1 N 0.701
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.753
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.000
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.724
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.724
29223.m000023 Ricinus communis 29223.m000023 N 0.753
27613.m000645 Ricinus communis 27613.m000645 N 0.744
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.713
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.000
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.000
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.000
PK20504.1 Cannabis sativa PK20504.1 N 0.000
ppa019338m Prunus persica ppa019338m N 0.724