MDP0000906147 (Malus x domestica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		MDP0000906147 T01113_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000906147 CCCH ZF 173 198
MDP0000906147 RRM 341 401

Links

Other CCCH ZF,RRM family RBPs
Other Malus x domestica RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK20504.1 Cannabis sativa PK20504.1 N 0.851
ppa003564m Prunus persica ppa003564m N 0.943
MDP0000214614 Malus x domestica MDP0000214614 N 0.943
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.816
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.874
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.828
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.828
29223.m000023 Ricinus communis 29223.m000023 N 0.770
27613.m000645 Ricinus communis 27613.m000645 N 0.793
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.897
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.770
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.759
AT3G52980 Arabidopsis thaliana AT3G52980-TAIR-G N 0.000
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.782
ppa019338m Prunus persica ppa019338m N 0.782