CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
nasonia_NCBI_hmm1068274
(
Nasonia vitripennis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
nasonia_NCBI_hmm1068274
T01823_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm1068274
CCCH ZF
66
87
CTKYDETTGICPDGDECPNLHR
nasonia_NCBI_hmm1068274
CCCH ZF
112
129
ARGFCVKNGPHCAFAHGN
nasonia_NCBI_hmm1068274
CCCH ZF
263
289
YKSTKCNDVQQAGYCPRGVFCAFAHVD
Links
Other
CCCH ZF
family RBPs
Other
Nasonia vitripennis
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOAG_08235
Loa loa
LOAG_08235
N
0.000
CBG02238
Caenorhabditis briggsae
CBG02238
N
0.000
CBN10862
Caenorhabditis brenneri
CBN10862
N
0.000
CBN20898
Caenorhabditis brenneri
CBN20898
N
0.000
CBN22260
Caenorhabditis brenneri
CBN22260
N
0.000
CRE03839
Caenorhabditis remanei
CRE03839
N
0.000
cey-2
Caenorhabditis elegans
F46F11.2
N
0.000
PPA14638
Pristionchus pacificus
PPA14638
N
0.000