CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBN10862
(
Caenorhabditis brenneri
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
CBN10862
T16725_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBN10862
CSD
61
132
GLQGKVKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSETEKFYLRTLGDDEEVLFDLVDGKNGPEAANVTGP
Links
Other
CSD
family RBPs
Other
Caenorhabditis brenneri
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG02238
Caenorhabditis briggsae
CBG02238
N
0.972
CBN20898
Caenorhabditis brenneri
CBN20898
N
0.958
cey-2
Caenorhabditis elegans
F46F11.2
N
0.958
CBN22260
Caenorhabditis brenneri
CBN22260
N
0.958
CRE03839
Caenorhabditis remanei
CRE03839
N
0.931
CBG11894
Caenorhabditis briggsae
CBG11894
N
0.903
cey-3
Caenorhabditis elegans
M01E11.5
N
0.792
CRE03641
Caenorhabditis remanei
CRE03641
N
0.779
CJA04706
Caenorhabditis japonica
CJA04706
N
0.740
Bm1_03385
Brugia malayi
Bm1_03385
N
0.740
LOAG_08235
Loa loa
LOAG_08235
N
0.712