CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBG02238
(
Caenorhabditis briggsae
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
CBG02238
T16720_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG02238
CSD
60
131
GLQGKVKWYSVLRRYGFISRNDGEKDVFVHQTAIAKSLTEKFYLRTLGDEEEVLFDLVDGKNGPEAANVTGP
Links
Other
CSD
family RBPs
Other
Caenorhabditis briggsae
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN20898
Caenorhabditis brenneri
CBN20898
N
0.972
CBN22260
Caenorhabditis brenneri
CBN22260
N
0.972
CBN10862
Caenorhabditis brenneri
CBN10862
N
0.972
cey-2
Caenorhabditis elegans
F46F11.2
N
0.944
CRE03839
Caenorhabditis remanei
CRE03839
N
0.944
CBG11894
Caenorhabditis briggsae
CBG11894
N
0.917
cey-3
Caenorhabditis elegans
M01E11.5
N
0.805
CRE03641
Caenorhabditis remanei
CRE03641
N
0.792
CJA04706
Caenorhabditis japonica
CJA04706
N
0.753
Bm1_03385
Brugia malayi
Bm1_03385
N
0.740
LOAG_08235
Loa loa
LOAG_08235
N
0.712