CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MBNL1
(
Otolemur garnettii
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSOGAG00000009336
T03085_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000008362
CCCH ZF
16
40
LEVCREFQRGTCSRPDTECKFAHPS
ENSOGAP00000008362
CCCH ZF
182
206
XXVCREYQRGNCNRGENDCRFAHPA
ENSOGAP00000008362
CCCH ZF
217
240
TVTVCMDYIKGRCSREKCKYFHPP
Links
Other
CCCH ZF
family RBPs
Other
Otolemur garnettii
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CC1G_13772
Coprinopsis cinerea
CC1G_13772
N
0.000
estExt_fgenesh3_pg.C_1090054
Postia placenta
estExt_fgenesh3_pg.C_1090054
N
0.000
estExt_Genewise1.C_1410078
Postia placenta
estExt_Genewise1.C_1410078
N
0.000
gw1.16.51.1
Schizophyllum commune
gw1.16.51.1
N
0.000
gww1.1.839.1
Laccaria bicolor
gww1.1.839.1
N
0.000
estExt_fgenesh2_kg.C_10072
Agaricus bisporus
estExt_fgenesh2_kg.C_10072
N
0.000
estExt_fgenesh2_pg.C_10668
Serpula lacrymans
estExt_fgenesh2_pg.C_10668
N
0.000
estExt_genemark.C_31602
Pleurotus ostreatus
estExt_genemark.C_31602
N
0.000