CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Lime1
(
Rattus norvegicus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSRNOG00000014235
T03319_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000019084
CCCH ZF
171
195
SLKPCPFFLEGKCRFKENCRFSHGQ
ENSRNOP00000039811
CCCH ZF
193
217
SLKPCPFFLEGKCRFKENCRFSHGQ
Links
Other
CCCH ZF
family RBPs
Other
Rattus norvegicus
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL010018
Aedes aegypti
AAEL010018
N
0.000
GK17751
Drosophila willistoni
FBgn0219750
N
0.000
GJ12391
Drosophila virilis
FBgn0199634
N
0.000
GM24938
Drosophila sechellia
FBgn0179800
N
0.000
GI12487
Drosophila mojavensis
FBgn0135244
N
0.000
GH16406
Drosophila grimshawi
FBgn0123877
N
0.000
GG15082
Drosophila erecta
FBgn0107336
N
0.000
GF10107
Drosophila ananassae
FBgn0087148
N
0.000
Unr
Drosophila melanogaster
FBgn0035895
N
0.000
AGAP004937
Anopheles gambiae
AGAP004937
N
0.000
GA23356-RA
Drosophila pseudoobscura
FBgn0244758
N
0.000