Lime1 (Rattus norvegicus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSRNOG00000014235 T03319_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000019084 CCCH ZF 171 195
ENSRNOP00000039811 CCCH ZF 193 217

Links

Other CCCH ZF family RBPs
Other Rattus norvegicus RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ZGPAT_BOVIN Bos taurus ENSBTAG00000007498 N 0.920
ENSPPYG00000011246 Pongo pygmaeus ENSPPYG00000011246 N 1.000
ZGPAT Pan troglodytes ENSPTRG00000013750 N 1.000
ZGPAT Pteropus vampyrus ENSPVAG00000013489 N 0.920
ZGPAT Spermophilus tridecemlineatus ENSSTOG00000011986 N 0.920
ZGPAT Tetraodon nigroviridis ENSTNIG00000004165 N 0.760
ZGPAT Takifugu rubripes ENSTRUG00000010488 N 0.731
ZGPAT Tursiops truncatus ENSTTRG00000012223 N 0.920
Ame_R014267 Ailuropoda melanoleuca Ame_R014267 N 0.960
AAH84897 Xenopus laevis AAH84897 N 0.731
ZGPAT Procavia capensis ENSPCAG00000001883 N 0.960
ZGPAT Otolemur garnettii ENSOGAG00000004502 N 0.960
ZGPAT Ornithorhynchus anatinus ENSOANG00000004932 N 1.000
ZGPAT Canis familiaris ENSCAFG00000013056 N 0.880
ZGPAT Callithrix jacchus ENSCJAG00000010398 N 1.000
ZGPAT Cavia porcellus ENSCPOG00000014427 N 1.000
ZGPAT Dasypus novemcinctus ENSDNOG00000025874 N 1.000
ZGPAT Felis catus ENSFCAG00000001173 N 0.960
ZGPAT Homo sapiens ENSG00000197114 N 1.000
ZGPAT Gorilla gorilla ENSGGOG00000004801 N 1.000
LOC719499 Macaca mulatta ENSMMUG00000000171 N 1.000
ZGPAT Monodelphis domestica ENSMODG00000017016 N 1.000
Zgpat Mus musculus ENSMUSG00000027582 N 1.000
Q5U4Z3 Xenopus laevis Q5U4Z3 N 0.731