188708 (Helobdella robusta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 188708 T04660_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
188708 CCCH ZF 40 60
188708 CCCH ZF 232 258

Links

Other CCCH ZF family RBPs
Other Helobdella robusta RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH46725 Xenopus laevis AAH46725 N 0.740
UNK Pteropus vampyrus ENSPVAG00000008460 N 0.700
UNK Pan troglodytes ENSPTRG00000009656 N 0.700
ENSPPYG00000008637 Pongo pygmaeus ENSPPYG00000008637 N 0.700
ENSPPYG00000006950 Pongo pygmaeus ENSPPYG00000006950 N 0.712
UNK Procavia capensis ENSPCAG00000004504 N 0.700
UNKL Oryzias latipes ENSORLG00000005070 N 0.784
UNK Oryctolagus cuniculus ENSOCUG00000014994 N 0.700
Unk Mus musculus ENSMUSG00000020770 N 0.700
Unkl Mus musculus ENSMUSG00000015127 N 0.760
UNKL Monodelphis domestica ENSMODG00000016188 N 0.765
D4A564_RAT Rattus norvegicus ENSRNOG00000006600 N 0.700
RGD1565247 Rattus norvegicus ENSRNOG00000017598 N 0.745
UNK Sus scrofa ENSSSCG00000017201 N 0.700
Ame_R007986 Ailuropoda melanoleuca Ame_R007986 N 0.700
estExt_Genewise1.C_sca_750115 Lottia gigantea estExt_Genewise1.C_sca_750115 N 0.760
e_gw.394.2.1 Branchiostoma floridae e_gw.394.2.1 N 0.720
SNAPOd2T00019464001 Oikopleura dioica SNAPOd2T00019464001 N 0.720
unk Xenopus tropicalis ENSXETG00000012578 N 0.720
UNKL Takifugu rubripes ENSTRUG00000012086 N 0.725
UNK Takifugu rubripes ENSTRUG00000007192 N 0.700
UNKL Tetraodon nigroviridis ENSTNIG00000018588 N 0.706
UNK Taeniopygia guttata ENSTGUG00000008279 N 0.740
UNK Spermophilus tridecemlineatus ENSSTOG00000013344 N 0.700
UNK Monodelphis domestica ENSMODG00000007684 N 0.720
UNK Macaca mulatta ENSMMUG00000013646 N 0.700
UNK Myotis lucifugus ENSMLUG00000015453 N 0.700
LOC100067623 Equus caballus ENSECAG00000010641 N 0.712
Unk Dipodomys ordii ENSDORG00000008133 N 0.700
UNKL Danio rerio ENSDARG00000037838 N 0.784
UNK Cavia porcellus ENSCPOG00000012679 N 0.700
UNKL Cavia porcellus ENSCPOG00000011846 N 0.745
LOC100390502 Callithrix jacchus ENSCJAG00000014056 N 0.700
UNK_CANFA Canis familiaris ENSCAFG00000004925 N 0.700
A1A4K6_BOVIN Bos taurus ENSBTAG00000016287 N 0.700
UNK Anolis carolinensis ENSACAG00000007303 N 0.740
AGAP000684 Anopheles gambiae AGAP000684 N 0.725
UNK Equus caballus ENSECAG00000024672 N 0.700
UNK Felis catus ENSFCAG00000005757 N 0.706
UNKL Homo sapiens ENSG00000059145 N 0.712
UNKL Meleagris gallopavo ENSMGAG00000006920 N 0.784
UNK Meleagris gallopavo ENSMGAG00000004713 N 0.740
UNK Macropus eugenii ENSMEUG00000004094 N 0.720
UNK Loxodonta africana ENSLAFG00000022662 N 0.700
UNKL Loxodonta africana ENSLAFG00000018262 N 0.725
UNKL Gorilla gorilla ENSGGOG00000014915 N 0.712
UNK Gorilla gorilla ENSGGOG00000009203 N 0.700
UNKL Gallus gallus ENSGALG00000006450 N 0.784
UNK Gallus gallus ENSGALG00000002278 N 0.740
UNK Homo sapiens ENSG00000132478 N 0.700
AAEL012456 Aedes aegypti AAEL012456 N 0.740