CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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UNKL
(
Meleagris gallopavo
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSMGAG00000006920
T02842_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000007017
CCCH ZF
56
79
YCTKYDETTGICPDGDDCPYLHRT
ENSMGAP00000007017
CCCH ZF
262
288
YKSTKCNDMRQTGYCPRGPFCAFAHGE
Links
Other
CCCH ZF
family RBPs
Other
Meleagris gallopavo
RBPs
59 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
UNKL
Gallus gallus
ENSGALG00000006450
N
1.000
UNKL
Oryzias latipes
ENSORLG00000005070
N
0.980
UNKL
Danio rerio
ENSDARG00000037838
N
0.980
UNKL
Monodelphis domestica
ENSMODG00000016188
N
0.961
UNKL
Takifugu rubripes
ENSTRUG00000012086
N
0.922
UNKL
Loxodonta africana
ENSLAFG00000018262
N
0.902
UNKL
Tetraodon nigroviridis
ENSTNIG00000018588
N
0.902
UNKL
Cavia porcellus
ENSCPOG00000011846
N
0.902
RGD1565247
Rattus norvegicus
ENSRNOG00000017598
N
0.902
estExt_Genewise1.C_sca_750115
Lottia gigantea
estExt_Genewise1.C_sca_750115
N
0.882
Unkl
Mus musculus
ENSMUSG00000015127
N
0.882
ENSPPYG00000006950
Pongo pygmaeus
ENSPPYG00000006950
N
0.865
UNKL
Homo sapiens
ENSG00000059145
N
0.865
LOC100067623
Equus caballus
ENSECAG00000010641
N
0.865
UNKL
Gorilla gorilla
ENSGGOG00000014915
N
0.865
AAH46725
Xenopus laevis
AAH46725
N
0.863
UNKL
Callithrix jacchus
ENSCJAG00000013151
N
0.846
AAEL012456
Aedes aegypti
AAEL012456
N
0.843
UNK
Felis catus
ENSFCAG00000005757
N
0.843
AGAP000684
Anopheles gambiae
AGAP000684
N
0.843
UNK
Meleagris gallopavo
ENSMGAG00000004713
N
0.843
UNK
Gallus gallus
ENSGALG00000002278
N
0.843
unk
Xenopus tropicalis
ENSXETG00000012578
N
0.843
UNK
Anolis carolinensis
ENSACAG00000007303
N
0.843
UNK
Taeniopygia guttata
ENSTGUG00000008279
N
0.843
UNKL
Bos taurus
ENSBTAG00000014126
N
0.827
UNK
Gasterosteus aculeatus
ENSGACG00000005102
N
0.827
UNK
Monodelphis domestica
ENSMODG00000007684
N
0.824
UNK
Takifugu rubripes
ENSTRUG00000007192
N
0.824
UNK
Macropus eugenii
ENSMEUG00000004094
N
0.824
SNAPOd2T00019464001
Oikopleura dioica
SNAPOd2T00019464001
N
0.824
e_gw.394.2.1
Branchiostoma floridae
e_gw.394.2.1
N
0.824
UNK
Homo sapiens
ENSG00000132478
N
0.804
D4A564_RAT
Rattus norvegicus
ENSRNOG00000006600
N
0.804
UNK
Sus scrofa
ENSSSCG00000017201
N
0.804
UNK
Equus caballus
ENSECAG00000024672
N
0.804
UNK
Procavia capensis
ENSPCAG00000004504
N
0.804
ENSPPYG00000008637
Pongo pygmaeus
ENSPPYG00000008637
N
0.804
UNK
Pteropus vampyrus
ENSPVAG00000008460
N
0.804
UNK
Macaca mulatta
ENSMMUG00000013646
N
0.804
UNK
Pan troglodytes
ENSPTRG00000009656
N
0.804
UNK
Gorilla gorilla
ENSGGOG00000009203
N
0.804
Unk
Dipodomys ordii
ENSDORG00000008133
N
0.804
UNK
Loxodonta africana
ENSLAFG00000022662
N
0.804
UNK
Cavia porcellus
ENSCPOG00000012679
N
0.804
UNK
Spermophilus tridecemlineatus
ENSSTOG00000013344
N
0.804
UNK
Oryctolagus cuniculus
ENSOCUG00000014994
N
0.804
Ame_R007986
Ailuropoda melanoleuca
Ame_R007986
N
0.804
UNK
Myotis lucifugus
ENSMLUG00000015453
N
0.804
UNK_CANFA
Canis familiaris
ENSCAFG00000004925
N
0.804
A1A4K6_BOVIN
Bos taurus
ENSBTAG00000016287
N
0.804
LOC100390502
Callithrix jacchus
ENSCJAG00000014056
N
0.804
Unk
Mus musculus
ENSMUSG00000020770
N
0.804
PHUM219250
Pediculus humanus
PHUM219250
N
0.784
188708
Helobdella robusta
188708
N
0.784
UNK
Tursiops truncatus
ENSTTRG00000015890
N
0.784
unk
Danio rerio
ENSDARG00000000935
N
0.765
UNK
Ochotona princeps
ENSOPRG00000012784
N
0.725
ISCW001613
Ixodes scapularis
ISCW001613
N
0.706