CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh3_pg.C_770054
(
Postia placenta
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
estExt_fgenesh3_pg.C_770054
T05076_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh3_pg.C_770054
CCCH ZF
2476
2502
YKTELCRSWEEKGTCRYGAKCQFAHGE
estExt_fgenesh3_pg.C_770054
CCCH ZF
2514
2540
YKTEICRTFWVSGSCPYGKRCCFIHTE
Links
Other
CCCH ZF
family RBPs
Other
Postia placenta
RBPs
130 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TIAL1
Oryctolagus cuniculus
ENSOCUG00000003783
I
0.000
TIAL1
Takifugu rubripes
ENSTRUG00000017931
I
0.000
TIAL1
Monodelphis domestica
ENSMODG00000008865
I
0.000
TIA1
Monodelphis domestica
ENSMODG00000011515
I
0.000
AAH45086
Xenopus laevis
AAH45086
N
0.000
tial1
Xenopus tropicalis
ENSXETG00000010234
N
0.000
TIAL1
Taeniopygia guttata
ENSTGUG00000011148
N
0.000
TIAL1
Sorex araneus
ENSSARG00000012980
N
0.000
TIAL1
Otolemur garnettii
ENSOGAG00000011417
N
0.000
TIAL1
Erinaceus europaeus
ENSEEUG00000011861
N
0.000
TIAL1
Myotis lucifugus
ENSMLUG00000004645
N
0.000
TIAL1
Meleagris gallopavo
ENSMGAG00000011368
N
0.000
TIAL1
Loxodonta africana
ENSLAFG00000003412
N
0.000
TIAL1
Echinops telfairi
ENSETEG00000020276
N
0.000
CAC95017
Xenopus laevis
CAC95017
N
0.000