CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIAL1
(
Erinaceus europaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSEEUG00000011861
T36829_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000010827
RRM
1
45
YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQTDSRRVSYCVGF
ENSEEUP00000010827
RRM
39
85
VSYCVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK
ENSEEUP00000010827
RRM
105
175
VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR
ENSEEUP00000010827
RRM
213
277
VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTAIEGHVVK
Links
Other
RRM
family RBPs
Other
Erinaceus europaeus
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TIAL1
Oryctolagus cuniculus
ENSOCUG00000003783
I
0.952
TIAL1
Taeniopygia guttata
ENSTGUG00000011148
N
0.952
Ame_R003219
Ailuropoda melanoleuca
Ame_R003219
N
0.952
TIAL1
Monodelphis domestica
ENSMODG00000008865
I
0.952
TIAL1
Loxodonta africana
ENSLAFG00000003412
N
0.952
TIAL1
Meleagris gallopavo
ENSMGAG00000011368
N
0.952
TIAL1
Sorex araneus
ENSSARG00000012980
N
0.940
TIAL1
Echinops telfairi
ENSETEG00000020276
N
0.935
tial1
Xenopus tropicalis
ENSXETG00000010234
N
0.896
CAC95017
Xenopus laevis
CAC95017
N
0.860
AAH45086
Xenopus laevis
AAH45086
N
0.852
TIAL1
Otolemur garnettii
ENSOGAG00000011417
N
0.834
TIAL1
Myotis lucifugus
ENSMLUG00000004645
N
0.825
TIA1
Monodelphis domestica
ENSMODG00000011515
I
0.798
TIAL1
Takifugu rubripes
ENSTRUG00000017931
I
0.782