CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_30385
(
Mucor circinelloides
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
estExt_Genewise1.C_30385
T05110_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_30385
CCCH ZF
71
96
PKTVLCIYFKQGNCERGAKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Mucor circinelloides
RBPs
64 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XP_002158150.1
Hydra magnipapillata
XP_002158150.1
N
0.731
estExt_Genewise1Plus.C_sca_12_chr5_2_00446
Nectria haematococca
estExt_Genewise1Plus.C_sca_12_chr5_2_00446
N
0.731
estExt_Genewise1Plus.C_31385
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_31385
N
0.769
estExt_Genewise1.C_60471
Cochliobolus heterostrophus C5
estExt_Genewise1.C_60471
N
0.808
estExt_Genewise1.C_110154
Neurospora discreta
estExt_Genewise1.C_110154
N
0.808
estExt_fgenesh2_kg.C_60126
Thielavia terrestris
estExt_fgenesh2_kg.C_60126
N
0.731
estExt_fgenesh1_pm.C_130118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_130118
N
0.808
estExt_fgenesh1_pg.C_70448
Myceliophthora thermophila
estExt_fgenesh1_pg.C_70448
N
0.731
e_gw1.2.668.1
Sporobolomyces roseus
e_gw1.2.668.1
N
0.731
e_gw1.19.91.1
Melampsora laricis populina
e_gw1.19.91.1
N
0.769
NCU01795
Neurospora crassa
NCU01795
N
0.808
F27D4.4
Caenorhabditis elegans
F27D4.4
N
0.731
ZC3H15
Takifugu rubripes
ENSTRUG00000004988
N
0.731
ZC3H15
Oryzias latipes
ENSORLG00000018606
N
0.731
ZC3H15
Gasterosteus aculeatus
ENSGACG00000011648
N
0.731
gw1.1.348.1
Phycomyces blakesleeanus
gw1.1.348.1
N
0.731
gwh2.4.391.1
Phanerochaete chrysosporium
gwh2.4.391.1
N
0.731
SAKL0E09966g
Lachancea kluyveri
SAKL0E09966g
N
0.769
PMAA_036360
Penicillium marneffei
PMAA_036360
N
0.731
Pc21g03130
Penicillium chrysogenum
Pc21g03130
N
0.808
Pa_3_8730
Podospora anserina
Pa_3_8730
N
0.846
Minc08580
Meloidogyne incognita
Minc08580
N
0.731
Kwal_2969
Kluyveromyces waltii
Kwal_2969
N
0.731
KLTH0G08162g
Kluyveromyces thermotolerans
KLTH0G08162g
N
0.731
KLLA0C13673g
Kluyveromyces lactis
KLLA0C13673g
N
0.731
fgenesh1_pg.00710_#_148
Aspergillus carbonarius
fgenesh1_pg.00710_#_148
N
0.769
estExt_Genewise1.C_22051
Cryphonectria parasitica
estExt_Genewise1.C_22051
N
0.808
e_gw1.8.939.1
Pleurotus ostreatus
e_gw1.8.939.1
N
0.769
CAGL0J08679g
Candida glabrata
CAGL0J08679g
N
0.769
ACL082W
Ashbya gossypii
ACL082W
N
0.769
AB07703.1
Alternaria brassicicola
AB07703.1
N
0.808
zc3h15
Danio rerio
ENSDARG00000015889
N
0.731
CRE20408
Caenorhabditis remanei
CRE20408
N
0.731
TERG_01412
Trichophyton rubrum
TERG_01412
N
0.808
TEQG_08385
Trichophyton equinum
TEQG_08385
N
0.808
SS1G_13466
Sclerotinia sclerotiorum
SS1G_13466
N
0.731
PTTG_08784
Puccinia triticina
PTTG_08784
N
0.769
PGTG_08922
Puccinia graminis
PGTG_08922
N
0.808
PABG_07629
Paracoccidioides brasiliensis
PABG_07629
N
0.731
MGYG_00125
Microsporum gypseum
MGYG_00125
N
0.808
MGG_07010
Magnaporthe oryzae
MGG_07010
N
0.846
MCYG_02954
Microsporum canis
MCYG_02954
N
0.808
CPSG_09723
Coccidioides posadasii
CPSG_09723
N
0.769
CNBG_3113
Cryptococcus neoformans
CNBG_3113
N
0.769
CIMG_09790
Coccidioides immitis
CIMG_09790
N
0.769
CC1G_07829
Coprinopsis cinerea
CC1G_07829
N
0.731
BC1G_06447
Botrytis cinerea
BC1G_06447
N
0.731
TESG_03135
Trichophyton tonsurans
TESG_03135
N
0.808
TRV_03417
Trichophyton verrucosum
TRV_03417
N
0.808
CJA17052
Caenorhabditis japonica
CJA17052
N
0.731
CBN11546
Caenorhabditis brenneri
CBN11546
N
0.731
CBN03898
Caenorhabditis brenneri
CBN03898
N
0.731
CBG00292
Caenorhabditis briggsae
CBG00292
N
0.731
NFIA_073040
Neosartorya fischeri
CADNFIAG00007899
N
0.808
ATEG_06133
Aspergillus terreus
CADATEAG00002525
N
0.846
ANIA_06922
Aspergillus nidulans
CADANIAG00007728
N
0.769
An14g05330
Aspergillus niger
CADANGAG00011470
N
0.769
AFUA_5G13930
Aspergillus fumigatus
CADAFUAG00006431
N
0.808
ACLA_016930
Aspergillus clavatus
CADACLAG00000891
N
0.808
DGIL_AUG5s16g7t1
Acyrtosiphon pisum
DGIL_AUG5s16g7t1
N
0.731
VDBG_05241
Verticillium albo atrum
VDBG_05241
N
0.731
VDAG_08863
Verticillium dahliae
VDAG_08863
N
0.731
UREG_04706
Uncinocarpus reesii
UREG_04706
N
0.731
ARB_01723
Arthroderma benhamiae
ARB_01723
N
0.808