CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PGTG_08922
(
Puccinia graminis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
PGTG_08922
T01486_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGTT_08922
CCCH ZF
95
120
PKTVLCQYFKTGTCEKGNKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Puccinia graminis
RBPs
59 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTTG_08784
Puccinia triticina
PTTG_08784
N
0.962
e_gw1.19.91.1
Melampsora laricis populina
e_gw1.19.91.1
N
0.885
estExt_Genewise1.C_60471
Cochliobolus heterostrophus C5
estExt_Genewise1.C_60471
N
0.846
gwh2.4.391.1
Phanerochaete chrysosporium
gwh2.4.391.1
N
0.846
CC1G_07829
Coprinopsis cinerea
CC1G_07829
N
0.846
CNBG_3113
Cryptococcus neoformans
CNBG_3113
N
0.846
AB07703.1
Alternaria brassicicola
AB07703.1
N
0.846
estExt_Genewise1Plus.C_31385
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_31385
N
0.846
TEQG_08385
Trichophyton equinum
TEQG_08385
N
0.808
gw1.1.348.1
Phycomyces blakesleeanus
gw1.1.348.1
N
0.808
CIMG_09790
Coccidioides immitis
CIMG_09790
N
0.808
TRV_03417
Trichophyton verrucosum
TRV_03417
N
0.808
estExt_Genewise1.C_30385
Mucor circinelloides
estExt_Genewise1.C_30385
N
0.808
TESG_03135
Trichophyton tonsurans
TESG_03135
N
0.808
TERG_01412
Trichophyton rubrum
TERG_01412
N
0.808
XP_002158150.1
Hydra magnipapillata
XP_002158150.1
N
0.808
Pa_3_8730
Podospora anserina
Pa_3_8730
N
0.808
e_gw1.8.939.1
Pleurotus ostreatus
e_gw1.8.939.1
N
0.808
ARB_01723
Arthroderma benhamiae
ARB_01723
N
0.808
BC1G_06447
Botrytis cinerea
BC1G_06447
N
0.808
e_gw1.2.668.1
Sporobolomyces roseus
e_gw1.2.668.1
N
0.808
SS1G_13466
Sclerotinia sclerotiorum
SS1G_13466
N
0.808
MCYG_02954
Microsporum canis
MCYG_02954
N
0.808
MGG_07010
Magnaporthe oryzae
MGG_07010
N
0.808
ATEG_06133
Aspergillus terreus
CADATEAG00002525
N
0.808
ANIA_06922
Aspergillus nidulans
CADANIAG00007728
N
0.808
CPSG_09723
Coccidioides posadasii
CPSG_09723
N
0.808
MGYG_00125
Microsporum gypseum
MGYG_00125
N
0.808
AFUA_5G13930
Aspergillus fumigatus
CADAFUAG00006431
N
0.769
estExt_Genewise1.C_22051
Cryphonectria parasitica
estExt_Genewise1.C_22051
N
0.769
Minc08580
Meloidogyne incognita
Minc08580
N
0.769
ACLA_016930
Aspergillus clavatus
CADACLAG00000891
N
0.769
PMAA_036360
Penicillium marneffei
PMAA_036360
N
0.769
Pc21g03130
Penicillium chrysogenum
Pc21g03130
N
0.769
PABG_07629
Paracoccidioides brasiliensis
PABG_07629
N
0.769
estExt_fgenesh1_pm.C_130118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_130118
N
0.769
UREG_04706
Uncinocarpus reesii
UREG_04706
N
0.769
estExt_Genewise1.C_110154
Neurospora discreta
estExt_Genewise1.C_110154
N
0.769
NFIA_073040
Neosartorya fischeri
CADNFIAG00007899
N
0.769
NCU01795
Neurospora crassa
NCU01795
N
0.769
HCAG_08348
Histoplasma capsulatum
HCAG_08348
N
0.731
BDBG_01641
Blastomyces dermatitidis
BDBG_01641
N
0.731
CPAG_03559
Candida parapsilosis
CPAG_03559
N
0.731
SAKL0E09966g
Lachancea kluyveri
SAKL0E09966g
N
0.731
s_451242
Phytophthora sojae
s_451242
N
0.731
ZC3H15
Takifugu rubripes
ENSTRUG00000004988
N
0.731
GD10149
Drosophila simulans
FBgn0181924
N
0.731
ZC3H15
Oryzias latipes
ENSORLG00000018606
N
0.731
ZC3H15
Gasterosteus aculeatus
ENSGACG00000011648
N
0.731
An14g05330
Aspergillus niger
CADANGAG00011470
N
0.731
zc3h15
Danio rerio
ENSDARG00000015889
N
0.731
72073
Helobdella robusta
72073
N
0.731
estExt_fgenesh1_pm.C_chr_90145
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_90145
N
0.731
ACL082W
Ashbya gossypii
ACL082W
N
0.731
CAGL0J08679g
Candida glabrata
CAGL0J08679g
N
0.731
DGIL_AUG5s16g7t1
Acyrtosiphon pisum
DGIL_AUG5s16g7t1
N
0.731
estExt_Genewise1Plus.C_sca_2280007
Lottia gigantea
estExt_Genewise1Plus.C_sca_2280007
N
0.731
PITG_04608
Phytophthora infestans
PITG_04608
N
0.731
fgenesh1_pg.00710_#_148
Aspergillus carbonarius
fgenesh1_pg.00710_#_148
N
0.731