CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CNBG_3113
(
Cryptococcus neoformans
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CNBG_3113
T01316_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CNBG_3113T0
CCCH ZF
72
97
PKTVLCVYFKAGHCEKGNKCKFSHDR
Links
Other
CCCH ZF
family RBPs
Other
Cryptococcus neoformans
RBPs
47 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.19.91.1
Melampsora laricis populina
e_gw1.19.91.1
N
0.885
CC1G_07829
Coprinopsis cinerea
CC1G_07829
N
0.846
PGTG_08922
Puccinia graminis
PGTG_08922
N
0.846
e_gw1.2.668.1
Sporobolomyces roseus
e_gw1.2.668.1
N
0.808
UREG_04706
Uncinocarpus reesii
UREG_04706
N
0.808
TRV_03417
Trichophyton verrucosum
TRV_03417
N
0.808
ACLA_016930
Aspergillus clavatus
CADACLAG00000891
N
0.808
gw1.1.348.1
Phycomyces blakesleeanus
gw1.1.348.1
N
0.808
Pc21g03130
Penicillium chrysogenum
Pc21g03130
N
0.808
e_gw1.8.939.1
Pleurotus ostreatus
e_gw1.8.939.1
N
0.808
ARB_01723
Arthroderma benhamiae
ARB_01723
N
0.808
gwh2.4.391.1
Phanerochaete chrysosporium
gwh2.4.391.1
N
0.808
TESG_03135
Trichophyton tonsurans
TESG_03135
N
0.808
ATEG_06133
Aspergillus terreus
CADATEAG00002525
N
0.808
MGYG_00125
Microsporum gypseum
MGYG_00125
N
0.808
PABG_07629
Paracoccidioides brasiliensis
PABG_07629
N
0.808
TERG_01412
Trichophyton rubrum
TERG_01412
N
0.808
PTTG_08784
Puccinia triticina
PTTG_08784
N
0.808
MCYG_02954
Microsporum canis
MCYG_02954
N
0.808
TEQG_08385
Trichophyton equinum
TEQG_08385
N
0.808
HCAG_08348
Histoplasma capsulatum
HCAG_08348
N
0.769
estExt_Genewise1Plus.C_31385
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_31385
N
0.769
Pa_3_8730
Podospora anserina
Pa_3_8730
N
0.769
MGG_07010
Magnaporthe oryzae
MGG_07010
N
0.769
estExt_Genewise1.C_60471
Cochliobolus heterostrophus C5
estExt_Genewise1.C_60471
N
0.769
AB07703.1
Alternaria brassicicola
AB07703.1
N
0.769
Minc08580
Meloidogyne incognita
Minc08580
N
0.769
fgenesh1_pg.00710_#_148
Aspergillus carbonarius
fgenesh1_pg.00710_#_148
N
0.769
BC1G_06447
Botrytis cinerea
BC1G_06447
N
0.769
SS1G_13466
Sclerotinia sclerotiorum
SS1G_13466
N
0.769
ANIA_06922
Aspergillus nidulans
CADANIAG00007728
N
0.769
An14g05330
Aspergillus niger
CADANGAG00011470
N
0.769
estExt_Genewise1.C_30385
Mucor circinelloides
estExt_Genewise1.C_30385
N
0.769
NFIA_073040
Neosartorya fischeri
CADNFIAG00007899
N
0.769
BDBG_01641
Blastomyces dermatitidis
BDBG_01641
N
0.769
CIMG_09790
Coccidioides immitis
CIMG_09790
N
0.769
CPSG_09723
Coccidioides posadasii
CPSG_09723
N
0.769
AFUA_5G13930
Aspergillus fumigatus
CADAFUAG00006431
N
0.769
PMAA_036360
Penicillium marneffei
PMAA_036360
N
0.731
XP_002158150.1
Hydra magnipapillata
XP_002158150.1
N
0.731
CPAG_03559
Candida parapsilosis
CPAG_03559
N
0.731
NCU01795
Neurospora crassa
NCU01795
N
0.731
PITG_04608
Phytophthora infestans
PITG_04608
N
0.731
estExt_fgenesh1_pm.C_130118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_130118
N
0.731
estExt_Genewise1.C_110154
Neurospora discreta
estExt_Genewise1.C_110154
N
0.731
s_451242
Phytophthora sojae
s_451242
N
0.731
estExt_Genewise1.C_22051
Cryphonectria parasitica
estExt_Genewise1.C_22051
N
0.731