CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr8g078060
(
Medicago truncatula
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Medtr8g078060
T05797_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr8g078060.1
CCCH ZF
93
118
FKTKLCCKFRVGTCPYITNCNFAHSV
Medtr8g078060.1
CCCH ZF
169
195
YKGRHCKKFYTEEGCPYGDSCTFLHDE
Medtr8g078060.1
CCCH ZF
257
283
WKTRICNKWEMTGYCPFGNKCHFAHGA
Links
Other
CCCH ZF
family RBPs
Other
Medicago truncatula
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SRSF9
Homo sapiens
ENSG00000111786
D
0.000
SRSF1
Homo sapiens
ENSG00000136450
D
0.000
ENSOCUG00000017678
Oryctolagus cuniculus
ENSOCUG00000017678
I
0.000
Sfrs9
Rattus norvegicus
ENSRNOG00000001163
I
0.000
D4A9L2_RAT
Rattus norvegicus
ENSRNOG00000042643
I
0.000
SRSF1
Sorex araneus
ENSSARG00000010949
I
0.000
SRSF9
Sus scrofa
ENSSSCG00000009906
I
0.000
SRSF1
Sus scrofa
ENSSSCG00000017626
I
0.000
SRSF1
Spermophilus tridecemlineatus
ENSSTOG00000000243
I
0.000
SRSF9
Tupaia belangeri
ENSTBEG00000008499
I
0.000
SRSF9
Pteropus vampyrus
ENSPVAG00000002229
I
0.000
SRSF1
Pan troglodytes
ENSPTRG00000009443
I
0.000
SRSF9
Oryctolagus cuniculus
ENSOCUG00000024603
I
0.000
SRSF9
Otolemur garnettii
ENSOGAG00000003852
I
0.000
SRSF9
Ochotona princeps
ENSOPRG00000004234
I
0.000
ENSORLG00000004580
Oryzias latipes
ENSORLG00000004580
I
0.000
SRSF1
Procavia capensis
ENSPCAG00000005199
I
0.000
ENSPPYG00000005031
Pongo pygmaeus
ENSPPYG00000005031
I
0.000
ENSPPYG00000008240
Pongo pygmaeus
ENSPPYG00000008240
I
0.000
ENSPPYG00000019910
Pongo pygmaeus
ENSPPYG00000019910
I
0.000
SRSF9
Pan troglodytes
ENSPTRG00000005535
I
0.000
SRSF1
Tupaia belangeri
ENSTBEG00000015378
I
0.000
SRSF9
Tetraodon nigroviridis
ENSTNIG00000000697
I
0.000
SRSF1
Tetraodon nigroviridis
ENSTNIG00000009993
I
0.000
e_gw.425.15.1
Branchiostoma floridae
e_gw.425.15.1
I
0.000
fgenesh2_pg.scaffold_118000083
Branchiostoma floridae
fgenesh2_pg.scaffold_118000083
I
0.000
gw1.25.268.1
Lottia gigantea
gw1.25.268.1
I
0.000
BGIBMGA013096
Bombyx mori
BGIBMGA013096
I
0.000
Ame_R003447
Ailuropoda melanoleuca
Ame_R003447
I
0.000
Ame_R019329
Ailuropoda melanoleuca
Ame_R019329
I
0.000
AAH42354
Xenopus laevis
AAH42354
I
0.000
AAH84289
Xenopus laevis
AAH84289
I
0.000
AAI23123
Xenopus laevis
AAI23123
I
0.000
e_gw1.83.149.1
Daphnia pulex
e_gw1.83.149.1
I
0.000
186029
Helobdella robusta
186029
I
0.000
ENSTNIG00000016223
Tetraodon nigroviridis
ENSTNIG00000016223
I
0.000
ENSTRUG00000003691
Takifugu rubripes
ENSTRUG00000003691
I
0.000
SRSF1
Takifugu rubripes
ENSTRUG00000017058
I
0.000
SRSF1
Tarsius syrichta
ENSTSYG00000013899
I
0.000
SRSF9
Tursiops truncatus
ENSTTRG00000000145
I
0.000
SRSF1
Vicugna pacos
ENSVPAG00000010094
I
0.000
srsf1
Xenopus tropicalis
ENSXETG00000008954
I
0.000
srsf9
Xenopus tropicalis
ENSXETG00000026940
I
0.000
ISCW014398
Ixodes scapularis
ISCW014398
I
0.000
AAI28932
Xenopus laevis
AAI28932
I
0.000
LOAG_10275
Loa loa
LOAG_10275
I
0.000
LOC100400391
Callithrix jacchus
ENSCJAG00000008111
I
0.000
LOC100392422
Callithrix jacchus
ENSCJAG00000014041
I
0.000
LOC100392422
Callithrix jacchus
ENSCJAG00000035311
I
0.000
SRSF9
Cavia porcellus
ENSCPOG00000006813
I
0.000
SRSF1
Cavia porcellus
ENSCPOG00000011760
I
0.000
SRSF9
Danio rerio
ENSDARG00000008097
I
0.000
srsf1a
Danio rerio
ENSDARG00000057691
I
0.000
Srsf9
Dipodomys ordii
ENSDORG00000013162
I
0.000
ENSCING00000007375
Ciona intestinalis
ENSCING00000007375
I
0.000
SRSF1
Choloepus hoffmanni
ENSCHOG00000001899
I
0.000
SRSF1
Canis familiaris
ENSCAFG00000017430
I
0.000
amel4_ncbi_hmm5595
Apis mellifera
amel4_ncbi_hmm5595
I
0.000
DGIL_AUG5s14011g9t1
Acyrtosiphon pisum
DGIL_AUG5s14011g9t1
I
0.000
nasonia_NCBI_hmm519234
Nasonia vitripennis
nasonia_NCBI_hmm519234
I
0.000
SRSF9
Anolis carolinensis
ENSACAG00000002877
I
0.000
SRSF1
Anolis carolinensis
ENSACAG00000005542
I
0.000
A4FUC6_BOVIN
Bos taurus
ENSBTAG00000012792
I
0.000
SFRS1_BOVIN
Bos taurus
ENSBTAG00000014766
I
0.000
SRSF9
Canis familiaris
ENSCAFG00000010314
I
0.000
SRSF9
Equus caballus
ENSECAG00000009116
I
0.000
LOC100056763
Equus caballus
ENSECAG00000016654
I
0.000
SRSF1
Erinaceus europaeus
ENSEEUG00000009255
I
0.000
SRSF9
Myotis lucifugus
ENSMLUG00000010346
I
0.000
SRSF1
Myotis lucifugus
ENSMLUG00000011040
I
0.000
ENSMMUG00000003260
Macaca mulatta
ENSMMUG00000003260
I
0.000
SRSF1
Macaca mulatta
ENSMMUG00000004725
I
0.000
SRSF9
Monodelphis domestica
ENSMODG00000003146
I
0.000
SRSF1
Monodelphis domestica
ENSMODG00000014781
I
0.000
Srsf1
Mus musculus
ENSMUSG00000018379
I
0.000
Srsf9
Mus musculus
ENSMUSG00000029538
I
0.000
SRSF1
Microcebus murinus
ENSMICG00000013639
I
0.000
SRSF9
Microcebus murinus
ENSMICG00000008674
I
0.000
SRSF9
Macropus eugenii
ENSMEUG00000004069
I
0.000
SRSF9
Erinaceus europaeus
ENSEEUG00000011655
I
0.000
SRSF1
Echinops telfairi
ENSETEG00000005349
I
0.000
ENSGACG00000011094
Gasterosteus aculeatus
ENSGACG00000011094
I
0.000
SRSF9
Gasterosteus aculeatus
ENSGACG00000016921
I
0.000
ENSGACG00000020621
Gasterosteus aculeatus
ENSGACG00000020621
I
0.000
SRSF1
Gorilla gorilla
ENSGGOG00000004386
I
0.000
SRSF9
Loxodonta africana
ENSLAFG00000006381
I
0.000
SRSF1
Loxodonta africana
ENSLAFG00000025743
I
0.000
ENSMUSG00000090049
Mus musculus
ENSMUSG00000090049
I
0.000