MDP0000706016 (Malus x domestica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 MDP0000706016 T06395_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000706016 CCCH ZF 91 116
MDP0000706016 CCCH ZF 164 190
MDP0000706016 CCCH ZF 224 250

Links

Other CCCH ZF family RBPs
Other Malus x domestica RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPAG_02338 Candida parapsilosis CPAG_02338 N 0.000
Scas_Contig567.6 Saccharomyces castellii Scas_Contig567.6 N 0.000
AB08315.1 Alternaria brassicicola AB08315.1 N 0.000
ADR062W Ashbya gossypii ADR062W N 0.000
Cd36_85970 Candida dubliniensis Cd36_85970 N 0.000
GSTUMT00003772001 Tuber melanosporum GSTUMT00003772001 N 0.000
KLLA0B09878g Kluyveromyces lactis KLLA0B09878g N 0.000
KLTH0E11836g Kluyveromyces thermotolerans KLTH0E11836g N 0.000
SAKL0H10846g Lachancea kluyveri SAKL0H10846g N 0.000
XP_002493509.1 Pichia pastoris XP_002493509.1 N 0.000
YALI0B12540g Yarrowia lipolytica YALI0B12540g N 0.000
EAT89389.2 Phaeosphaeria nodorum EAT89389.2 N 0.000
estExt_fgenesh1_pg.C_160206 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_160206 N 0.000
CTRG_02259 Candida tropicalis CTRG_02259 N 0.000
DEHA0D17303g Debaryomyces hansenii DEHA0D17303g N 0.000
FOXG_04082 Fusarium oxysporum FOXG_04082 N 0.000
FVEG_07196 Fusarium verticillioides FVEG_07196 N 0.000
orf19.7385 Candida albicans orf19.7385 N 0.000
PTRG_01963 Pyrenophora tritici repentis PTRG_01963 N 0.000
SJAG_03191 Schizosaccharomyces japonicus SJAG_03191 N 0.000
SNOG_02658 Stagonospora nodorum SNOG_02658 N 0.000
e_gwh1.2.1.2495.1 Pichia stipitis e_gwh1.2.1.2495.1 N 0.000
estExt_fgenesh1_kg.C_60003 Myceliophthora thermophila estExt_fgenesh1_kg.C_60003 N 0.000
ZYRO0F08690g Zygosaccharomyces rouxii ZYRO0F08690g N 0.000