gw1.10.611.1 (Lottia gigantea)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		gw1.10.611.1 T07585_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF7
M353_0.6 		Homo sapiens ACGAGAGAY SELEX
Cook et al.(2011)
954_10094314 		0.702
SRSF7
M331_0.6 		Homo sapiens AGACKACGAY SELEX
Cook et al.(2011)
790_10094314 		0.702
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.10.611.1 RRM 4 69
gw1.10.611.1 CCHC ZF 95 112

Links

Other CCHC ZF,RRM family RBPs
Other Lottia gigantea RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NOP15 Saccharomyces cerevisiae YNL110C N 0.000
SAKL0E10604g Lachancea kluyveri SAKL0E10604g N 0.000
Kwal_8458 Kluyveromyces waltii Kwal_8458 N 0.000
KLTH0D09262g Kluyveromyces thermotolerans KLTH0D09262g N 0.000
KLLA0F23650g Kluyveromyces lactis KLLA0F23650g N 0.000
CAGL0L03806g Candida glabrata CAGL0L03806g N 0.000
AFL224W Ashbya gossypii AFL224W N 0.000
A7TR62_VANPO Vanderwaltozyma polyspora A7TR62_VANPO N 0.000
18916_YNL110C Saccharomyces paradoxus 18916_YNL110C N 0.000
18449_YNL110C Saccharomyces mikatae 18449_YNL110C N 0.000
Scas_Contig666.11 Saccharomyces castellii Scas_Contig666.11 N 0.000
ZYRO0B09790g Zygosaccharomyces rouxii ZYRO0B09790g N 0.000