CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CAGL0L03806g
(
Candida glabrata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CAGL0L03806g
T55713_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CAGL0L03806g
RRM
127
197
IYVGRLPKGFHERELSKYFSQFGDLKEVRLARNKKTGNSRHYGFVQFVNTDDSRVAYDTMNNYLLMGHLLQ
Links
Other
RRM
family RBPs
Other
Candida glabrata
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Kwal_8458
Kluyveromyces waltii
Kwal_8458
N
0.859
KLTH0D09262g
Kluyveromyces thermotolerans
KLTH0D09262g
N
0.831
Scas_Contig666.11
Saccharomyces castellii
Scas_Contig666.11
N
0.817
SAKL0E10604g
Lachancea kluyveri
SAKL0E10604g
N
0.817
18449_YNL110C
Saccharomyces mikatae
18449_YNL110C
N
0.803
18916_YNL110C
Saccharomyces paradoxus
18916_YNL110C
N
0.803
A7TR62_VANPO
Vanderwaltozyma polyspora
A7TR62_VANPO
N
0.803
NOP15
Saccharomyces cerevisiae
YNL110C
N
0.803
Skud_Contig1428.4
Saccharomyces kudriavzevii
Skud_Contig1428.4
N
0.803
AFL224W
Ashbya gossypii
AFL224W
N
0.775
ZYRO0B09790g
Zygosaccharomyces rouxii
ZYRO0B09790g
N
0.761
KLLA0F23650g
Kluyveromyces lactis
KLLA0F23650g
N
0.746