CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTTG_09555
(
Puccinia triticina
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PTTG_09555
T08449_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PTTG_09555T0
CCHC ZF
197
214
VACSNCGKRGHRSNECPK
Links
Other
CCHC ZF
family RBPs
Other
Puccinia triticina
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_04014
Puccinia graminis
PGTG_04014
N
0.722
PTTG_10840
Puccinia triticina
PTTG_10840
N
0.889
PTTG_10254
Puccinia triticina
PTTG_10254
N
0.833
PTTG_08079
Puccinia triticina
PTTG_08079
N
0.944
PTTG_06497
Puccinia triticina
PTTG_06497
N
0.722
PTTG_06312
Puccinia triticina
PTTG_06312
N
0.722
PTTG_05128
Puccinia triticina
PTTG_05128
N
0.889
PTTG_04996
Puccinia triticina
PTTG_04996
N
0.944
PTTG_03789
Puccinia triticina
PTTG_03789
N
0.722
PTTG_03218
Puccinia triticina
PTTG_03218
N
0.722
PTTG_02420
Puccinia triticina
PTTG_02420
N
0.889
PTTG_01104
Puccinia triticina
PTTG_01104
N
0.833
PGTG_11924
Puccinia graminis
PGTG_11924
N
0.722
PGTG_11598
Puccinia graminis
PGTG_11598
N
0.722
PGTG_10181
Puccinia graminis
PGTG_10181
N
0.778
PGTG_09338
Puccinia graminis
PGTG_09338
N
0.722
PGTG_06444
Puccinia graminis
PGTG_06444
N
0.778
PTTG_11093
Puccinia triticina
PTTG_11093
N
0.889