CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CSDC2
(
Loxodonta africana
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
ENSLAFG00000027155
T16882_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000025418
CSD
68
135
VFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLT
Links
Other
CSD
family RBPs
Other
Loxodonta africana
RBPs
80 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
aret
Drosophila melanogaster
FBgn0000114
D
0.000
CpipJ_CPIJ016329
Culex pipiens
CpipJ_CPIJ016329
I
0.000
estExt_fgenesh2_pm.C_730008
Branchiostoma floridae
estExt_fgenesh2_pm.C_730008
I
0.000
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.000
BGIBMGA010431
Bombyx mori
BGIBMGA010431
I
0.000
CPIJ016329
Culex quinquefasciatus
CPIJ016329
I
0.000
AAEL000695
Aedes aegypti
AAEL000695
I
0.000
GL18622
Drosophila persimilis
FBgn0156223
N
0.000
GA25731-RA
Drosophila pseudoobscura
FBgn0247108
N
0.000
GE18585
Drosophila yakuba
FBgn0235992
N
0.000